Variant report

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1174857	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12718723	0.80[ASN][1000 genomes]
rs1689306	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1689312	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1731302	0.87[ASN][1000 genomes]
rs34585800	0.80[ASN][1000 genomes]
rs4526313	0.80[ASN][1000 genomes]
rs71544145	0.80[ASN][1000 genomes]
rs71544146	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888027	chr7:52588348-53190508	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1017676	chr7:52932139-53350524	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831001	chr7:53003534-53152783	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv607008	chr7:53009355-53068819	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
5	nsv464449	chr7:53009493-53026365	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv607009	chr7:53009493-53026365	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:53017200-53026200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:53017200-53026800	Weak transcription	Fetal Heart	heart
3	chr7:53022600-53024000	Enhancers	HUVEC	blood vessel
4	chr7:53022600-53025200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:53023000-53025000	Enhancers	Placenta Amnion	Placenta Amnion
6	chr7:53023000-53031000	Enhancers	Placenta	Placenta
7	chr7:53023200-53024000	Enhancers	Ovary	ovary
8	chr7:53023200-53024200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr7:53023200-53024800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr7:53023200-53024800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr7:53023400-53023800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:53023400-53024600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr7:53023400-53025000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr7:53023400-53025400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr7:53023600-53024000	Enhancers	Fetal Intestine Small	intestine
16	chr7:53023600-53024000	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr7:53023600-53024600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr7:53023600-53026800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr7:53023600-53027200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr7:53023600-53040000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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