Variant report

Variant	rs1583337
Chromosome Location	chr4:94283336-94283337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10012463	0.81[ASN][1000 genomes]
rs10019885	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10026391	0.81[ASN][1000 genomes]
rs1032125	0.83[ASN][1000 genomes]
rs11097362	0.92[ASN][1000 genomes]
rs11097363	0.81[ASN][1000 genomes]
rs11725679	0.89[ASN][1000 genomes]
rs11727464	0.86[ASN][1000 genomes]
rs11733231	0.82[ASN][1000 genomes]
rs1368715	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1368721	0.95[ASN][1000 genomes]
rs1433659	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1433662	0.85[ASN][1000 genomes]
rs1433663	0.85[ASN][1000 genomes]
rs1469738	0.84[ASN][1000 genomes]
rs17330509	0.92[ASN][1000 genomes]
rs1816432	0.99[ASN][1000 genomes]
rs1905710	0.80[ASN][1000 genomes]
rs1905729	0.83[ASN][1000 genomes]
rs2043414	0.83[ASN][1000 genomes]
rs2200376	0.81[ASN][1000 genomes]
rs28404006	0.92[ASN][1000 genomes]
rs28446769	0.99[ASN][1000 genomes]
rs28545592	0.89[ASN][1000 genomes]
rs2870696	0.84[ASN][1000 genomes]
rs2870699	0.88[ASN][1000 genomes]
rs2870702	0.82[ASN][1000 genomes]
rs2870703	0.81[ASN][1000 genomes]
rs2904482	0.86[ASN][1000 genomes]
rs4693317	0.81[ASN][1000 genomes]
rs4693318	0.80[EUR][1000 genomes]
rs6831478	0.81[ASN][1000 genomes]
rs6836194	0.83[ASN][1000 genomes]
rs6851479	0.92[ASN][1000 genomes]
rs7668090	0.81[ASN][1000 genomes]
rs9790436	0.81[ASN][1000 genomes]
rs9994126	0.83[ASN][1000 genomes]
rs9998683	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013255	chr4:94027129-94462345	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2830401	chr4:94141655-94450106	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3584808	chr4:94156602-94559327	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1008055	chr4:94169131-95030074	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv879616	chr4:94190621-94289256	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv533846	chr4:94264488-94462921	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1583337	HPGDS	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94280600-94285400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:94282000-94284000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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