Variant report
| Variant | rs1584250 |
|---|---|
| Chromosome Location | chr1:159507674-159507675 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:5)
| rs_ID | r2[population] |
|---|---|
| rs11265186 | 1.00[TSI][hapmap] |
| rs11265187 | 0.81[CEU][hapmap];1.00[TSI][hapmap] |
| rs12118628 | 1.00[TSI][hapmap] |
| rs12145616 | 1.00[TSI][hapmap] |
| rs4128725 | 1.00[TSI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1005195 | chr1:159452759-159910337 | Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 90 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:3)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1584250 | PAQR6 | cis | cerebellum | SCAN |
| rs1584250 | KCNJ9 | cis | parietal | SCAN |
| rs1584250 | THBS3 | cis | cerebellum | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
