Variant report
Variant | rs1590264 |
---|---|
Chromosome Location | chr9:10226432-10226433 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10217572 | 0.96[JPT][hapmap] |
rs10217711 | 0.96[JPT][hapmap] |
rs10217805 | 0.82[CEU][hapmap];0.90[EUR][1000 genomes] |
rs10738156 | 0.81[CEU][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes] |
rs10756010 | 0.94[EUR][1000 genomes] |
rs10809036 | 0.87[CHB][hapmap];0.91[JPT][hapmap];0.87[AFR][1000 genomes];0.96[ASN][1000 genomes] |
rs10809037 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10809039 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
rs10809042 | 0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs10809043 | 0.83[EUR][1000 genomes] |
rs10809044 | 0.81[CEU][hapmap];0.91[EUR][1000 genomes] |
rs10809045 | 0.82[CEU][hapmap];0.96[JPT][hapmap];0.90[EUR][1000 genomes] |
rs10958964 | 0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10958965 | 0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs10958968 | 0.91[EUR][1000 genomes] |
rs12353282 | 0.82[CEU][hapmap];0.96[JPT][hapmap];0.90[EUR][1000 genomes] |
rs1322142 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1322143 | 0.86[CEU][hapmap];0.96[JPT][hapmap];0.92[EUR][1000 genomes] |
rs13300585 | 0.91[JPT][hapmap];0.87[EUR][1000 genomes] |
rs1407348 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1407349 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs1885431 | 0.91[CHB][hapmap];1.00[JPT][hapmap] |
rs2057475 | 0.81[ASN][1000 genomes] |
rs2475324 | 0.82[JPT][hapmap] |
rs2890914 | 0.84[EUR][1000 genomes] |
rs4143460 | 0.83[CHB][hapmap] |
rs56381014 | 0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs61314978 | 0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs7846730 | 0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
rs7866028 | 0.93[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.95[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1034731 | chr9:9776126-10481262 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
2 | nsv892295 | chr9:9832245-10380406 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
3 | nsv1030657 | chr9:10002355-10481262 | Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
4 | nsv1033178 | chr9:10169848-10428731 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv471280 | chr9:10172572-10277602 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv466158 | chr9:10172573-10277602 | Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
7 | nsv613375 | chr9:10172573-10277602 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | esv2758179 | chr9:10188450-10370398 | Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
9 | esv2759666 | chr9:10188450-10370398 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
10 | nsv892310 | chr9:10197122-10279606 | Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
11 | nsv1034040 | chr9:10225500-10255910 | Enhancers Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:10225800-10232800 | Weak transcription | Fetal Heart | heart |