Variant report
Variant | rs1591635 |
---|---|
Chromosome Location | chr1:103587718-103587719 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10874680 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs11164669 | 0.82[YRI][hapmap] |
rs11164673 | 0.88[CEU][hapmap];0.82[CHB][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs11164719 | 0.92[AMR][1000 genomes] |
rs11586799 | 0.92[AMR][1000 genomes] |
rs12026245 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12032097 | 0.92[AMR][1000 genomes] |
rs12407864 | 0.92[AMR][1000 genomes] |
rs12410662 | 0.89[AMR][1000 genomes] |
rs12568878 | 0.87[AFR][1000 genomes];0.84[EUR][1000 genomes] |
rs12569258 | 0.89[AMR][1000 genomes] |
rs12726315 | 0.88[AMR][1000 genomes] |
rs12734684 | 0.92[AMR][1000 genomes] |
rs12739207 | 0.91[AMR][1000 genomes] |
rs1415365 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1528206 | 0.87[AMR][1000 genomes] |
rs1881271 | 0.92[AMR][1000 genomes] |
rs1881272 | 0.92[AMR][1000 genomes] |
rs2178161 | 0.92[AMR][1000 genomes] |
rs2376281 | 0.85[YRI][hapmap] |
rs35286522 | 0.92[AMR][1000 genomes] |
rs35408333 | 0.92[AMR][1000 genomes] |
rs4908291 | 0.85[YRI][hapmap] |
rs6577356 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6657513 | 0.92[AMR][1000 genomes] |
rs6692914 | 0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7526357 | 0.88[AMR][1000 genomes] |
rs7530263 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs954564 | 0.92[AMR][1000 genomes] |
rs9970114 | 0.82[YRI][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv522922 | chr1:103305021-103764640 | Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv830893 | chr1:103458498-103635579 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | nsv931600 | chr1:103548397-104161031 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
4 | nsv498007 | chr1:103573857-104107589 | Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:103578600-103594400 | Weak transcription | HSMM | muscle |