Variant report

Variant	rs1592335
Chromosome Location	chr1:114109015-114109016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11102659	1.00[ASN][1000 genomes]
rs11102679	1.00[ASN][1000 genomes]
rs11102680	1.00[ASN][1000 genomes]
rs11578447	1.00[ASN][1000 genomes]
rs12063602	1.00[ASN][1000 genomes]
rs12064048	1.00[ASN][1000 genomes]
rs12086911	1.00[ASN][1000 genomes]
rs12090627	1.00[ASN][1000 genomes]
rs12094849	1.00[ASN][1000 genomes]
rs12095398	1.00[ASN][1000 genomes]
rs12097198	1.00[ASN][1000 genomes]
rs34639107	1.00[ASN][1000 genomes]
rs998315	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437013	chr1:114065955-114129092	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv947128	chr1:114088844-114122533	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114083400-114110000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr1:114088600-114109800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:114094800-114138400	Weak transcription	NHDF-Ad	bronchial
4	chr1:114100200-114127600	Weak transcription	Ovary	ovary
5	chr1:114100600-114112600	Weak transcription	Esophagus	oesophagus
6	chr1:114100600-114118200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:114100600-114118600	Weak transcription	Lung	lung
8	chr1:114100600-114118800	Weak transcription	Pancreas	Pancrea
9	chr1:114100600-114140200	Weak transcription	Left Ventricle	heart
10	chr1:114100600-114173400	Weak transcription	Gastric	stomach
11	chr1:114100800-114109600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr1:114101000-114112600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:114105600-114109600	Weak transcription	Right Ventricle	heart
14	chr1:114107800-114110400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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