Variant report

Variant	rs159408
Chromosome Location	chr6:133702841-133702842
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs159407	0.81[CEU][hapmap]
rs159410	0.86[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs159408	VNN3	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133684600-133717800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133699400-133705600	Weak transcription	Hela-S3	cervix
3	chr6:133701000-133703200	Weak transcription	HSMMtube	muscle
4	chr6:133701200-133703800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:133701800-133703800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:133701800-133710000	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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