Variant report

Variant	rs159415
Chromosome Location	chr6:133710214-133710215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs159425	0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs296424	0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.91[ASN][1000 genomes]
rs296425	0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.91[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs159415	EPB41L2	cis	parietal	SCAN
rs159415	VNN3	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133684600-133717800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133703800-133713200	Weak transcription	HSMMtube	muscle
3	chr6:133707600-133714400	Weak transcription	Hela-S3	cervix
4	chr6:133709000-133710600	Enhancers	Right Atrium	heart
5	chr6:133709200-133712800	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:133709200-133713600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:133709800-133710600	Enhancers	Fetal Heart	heart
8	chr6:133709800-133712600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:133709800-133719800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:133710000-133710400	Enhancers	Brain Substantia Nigra	brain
11	chr6:133710000-133710600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:133710000-133710600	Enhancers	Psoas Muscle	Psoas
13	chr6:133710000-133710600	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr6:133710000-133711200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:133710000-133711200	Enhancers	Left Ventricle	heart
16	chr6:133710000-133711200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr6:133710200-133710400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:133710200-133712600	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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