Variant report

Variant	rs1594507
Chromosome Location	chrX:57418397-57418398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3021364	1.00[YRI][hapmap]
rs5915012	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519013	chrX:57405163-57928734	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57390400-57419600	Weak transcription	Primary T cells from cord blood	blood
2	chrX:57390800-57421000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chrX:57392000-57423600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chrX:57405600-57426400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chrX:57407800-57422600	Weak transcription	Liver	Liver
6	chrX:57416000-57420400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chrX:57417400-57425000	Weak transcription	Pancreas	Pancrea
8	chrX:57417800-57421400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chrX:57418200-57420600	Weak transcription	Primary T cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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