Variant report

Variant	rs1594617
Chromosome Location	chr2:183028456-183028457
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11690832	0.84[CEU][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12994855	0.96[CEU][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes]
rs13024682	0.96[CEU][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes]
rs1471587	0.88[EUR][1000 genomes]
rs4666821	0.84[EUR][1000 genomes]
rs6433958	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs6734332	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6741055	1.00[CEU][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183013600-183048000	Weak transcription	Aorta	Aorta
2	chr2:183019400-183048200	Weak transcription	Left Ventricle	heart
3	chr2:183021400-183029200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:183025400-183028800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:183025600-183046000	Weak transcription	Fetal Stomach	stomach
6	chr2:183028000-183028800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:183028000-183031200	Enhancers	Fetal Intestine Large	intestine
8	chr2:183028400-183032000	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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