Variant report

Variant	rs1595346
Chromosome Location	chr6:74559458-74559459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10943133	0.88[CEU][hapmap];0.84[GIH][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs11753946	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11963300	0.95[EUR][1000 genomes]
rs13203705	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1501192	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.83[LWK][hapmap];0.96[MEX][hapmap];0.80[MKK][hapmap];0.89[TSI][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2882704	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3751645	1.00[ASW][hapmap];0.96[CEU][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.92[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4301271	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4706559	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4708091	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4708093	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4708094	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6453701	0.80[EUR][1000 genomes]
rs7454989	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7753766	0.98[EUR][1000 genomes]
rs7774119	0.82[CEU][hapmap]
rs9442984	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9442986	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9447033	0.88[CEU][hapmap];0.84[GIH][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs9447036	1.00[CEU][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9447062	0.92[EUR][1000 genomes]
rs9447068	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9447069	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023250	chr6:74189642-74605976	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
2	nsv538306	chr6:74189642-74605976	Strong transcription Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
3	nsv463154	chr6:74412048-74775904	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv603695	chr6:74412048-74775904	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74526400-74565000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:74534400-74580600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:74542400-74566800	Weak transcription	HMEC	breast
4	chr6:74552800-74567600	Weak transcription	NHDF-Ad	bronchial
5	chr6:74554200-74566800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:74555000-74565000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:74555200-74566800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:74555400-74565000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:74555400-74574400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:74555600-74565000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:74555600-74569600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:74555800-74562000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:74556000-74576000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:74556800-74574400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:74557400-74562000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:74557600-74562000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:74558600-74560000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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