Variant report

Variant	rs159572
Chromosome Location	chr5:55507046-55507047
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:55280327..55282237-chr5:55506803..55508537,2	MCF-7	breast:
2	chr5:55418053..55420597-chr5:55506511..55509102,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs149117	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs149139	0.90[CEU][hapmap];0.80[AMR][1000 genomes]
rs149140	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs149175	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs149364	0.88[EUR][1000 genomes]
rs149489	0.86[CEU][hapmap]
rs149573	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs150913	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs152313	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs152343	0.86[CEU][hapmap];0.88[JPT][hapmap]
rs152344	0.86[CEU][hapmap];0.88[JPT][hapmap]
rs152345	0.86[CEU][hapmap];0.88[JPT][hapmap]
rs152346	0.85[CEU][hapmap]
rs159059	0.91[CEU][hapmap];0.87[JPT][hapmap]
rs159060	0.90[CEU][hapmap]
rs159066	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs159067	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs159562	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs159565	0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs159566	0.92[YRI][hapmap];0.97[AFR][1000 genomes]
rs159567	0.97[AFR][1000 genomes]
rs159570	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs159571	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs160007	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs160009	0.93[YRI][hapmap];0.98[AFR][1000 genomes]
rs160491	0.91[CEU][hapmap]
rs160492	0.95[CEU][hapmap]
rs161210	0.90[CEU][hapmap];0.88[JPT][hapmap];0.80[EUR][1000 genomes]
rs161213	0.81[EUR][1000 genomes]
rs167623	0.80[EUR][1000 genomes]
rs187473	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs193746	0.81[CEU][hapmap]
rs2441118	0.98[AFR][1000 genomes]
rs293595	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs36757	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs405526	0.90[CEU][hapmap];0.88[JPT][hapmap]
rs469755	0.91[CEU][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754071	chr5:54533872-55523633	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:55506600-55507600	Enhancers	HUVEC	blood vessel
2	chr5:55506800-55507600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:55506800-55507800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:55506800-55507800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:55506800-55507800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr5:55506800-55507800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:55506800-55507800	Enhancers	HSMM	muscle
8	chr5:55506800-55508200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:55506800-55508200	Enhancers	NHDF-Ad	bronchial
10	chr5:55506800-55508400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:55506800-55508400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:55506800-55508400	Enhancers	Osteobl	bone
13	chr5:55506800-55508600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:55506800-55508600	Enhancers	Hela-S3	cervix
15	chr5:55507000-55507400	Flanking Active TSS	HepG2	liver
16	chr5:55507000-55507800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:55507000-55507800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:55507000-55507800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:55507000-55507800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:55507000-55507800	Flanking Active TSS	A549	lung
21	chr5:55507000-55507800	Enhancers	HMEC	breast
22	chr5:55507000-55508200	Enhancers	NH-A	brain
23	chr5:55507000-55508200	Enhancers	NHLF	lung
24	chr5:55507000-55508400	Enhancers	Fetal Lung	lung
25	chr5:55507000-55508600	Enhancers	Muscle Satellite Cultured Cells	--
26	chr5:55507000-55508600	Enhancers	Placenta	Placenta
27	chr5:55507000-55508600	Enhancers	HSMMtube	muscle

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