Variant report

Variant	rs1600251
Chromosome Location	chr8:11345637-11345638
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1478902	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17153216	1.00[AMR][1000 genomes]
rs2127133	1.00[YRI][hapmap]
rs2169891	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2244909	1.00[AMR][1000 genomes]
rs2245126	1.00[YRI][hapmap]
rs2249275	1.00[YRI][hapmap]
rs2252382	1.00[AMR][1000 genomes]
rs2252386	1.00[AMR][1000 genomes]
rs2252407	1.00[AMR][1000 genomes]
rs2252517	1.00[AMR][1000 genomes]
rs2255104	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2264304	1.00[YRI][hapmap]
rs2264305	1.00[YRI][hapmap]
rs2264869	1.00[YRI][hapmap]
rs2264871	1.00[AMR][1000 genomes]
rs2264873	1.00[AMR][1000 genomes]
rs2264908	1.00[AMR][1000 genomes]
rs2618438	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2618439	1.00[YRI][hapmap]
rs2618442	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2618447	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2618462	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2618468	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2729937	1.00[YRI][hapmap]
rs2736333	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2736334	1.00[AMR][1000 genomes]
rs4841555	1.00[AMR][1000 genomes]
rs57139007	1.00[AMR][1000 genomes]
rs58750942	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61142806	1.00[AMR][1000 genomes]
rs899369	1.00[AMR][1000 genomes]
rs931085	1.00[AMR][1000 genomes]
rs931086	1.00[AMR][1000 genomes]
rs936547	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs969985	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv34097	chr8:11177372-11489894	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1022074	chr8:11292256-11394526	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2762725	chr8:11322997-11350721	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11338200-11350000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:11339000-11353800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:11342200-11348600	ZNF genes & repeats	GM12878-XiMat	blood
4	chr8:11344200-11353800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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