Variant report

Variant	rs160105
Chromosome Location	chr13:93646247-93646248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs160107	1.00[EUR][1000 genomes]
rs160143	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs160144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs188633	1.00[EUR][1000 genomes]
rs191043	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs2780383	1.00[EUR][1000 genomes]
rs317321	1.00[EUR][1000 genomes]
rs317322	1.00[EUR][1000 genomes]
rs317323	1.00[EUR][1000 genomes]
rs527437	1.00[EUR][1000 genomes]
rs696939	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2760298	chr13:93496826-93738391	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900910	chr13:93582208-93680065	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2756050	chr13:93614714-93657802	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93645400-93647400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:93646000-93646600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr13:93646000-93646600	Enhancers	NHEK	skin
4	chr13:93646000-93646800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr13:93646000-93646800	Enhancers	HSMM	muscle
6	chr13:93646000-93646800	Enhancers	NH-A	brain
7	chr13:93646000-93647000	Enhancers	Osteobl	bone
8	chr13:93646000-93647200	Enhancers	HMEC	breast
9	chr13:93646200-93646800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:93646200-93646800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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