Variant report
| Variant | rs1603305 |
|---|---|
| Chromosome Location | chr12:42010106-42010107 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10082912 | 0.86[ASN][1000 genomes] |
| rs10082917 | 0.90[ASN][1000 genomes] |
| rs1020536 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1020537 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10506202 | 0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11181060 | 0.83[ASN][1000 genomes] |
| rs11181069 | 0.80[ASN][1000 genomes] |
| rs11181070 | 0.81[ASN][1000 genomes] |
| rs12321449 | 0.83[ASN][1000 genomes] |
| rs1495774 | 0.83[ASN][1000 genomes] |
| rs17129602 | 0.86[ASN][1000 genomes] |
| rs17129608 | 0.85[ASN][1000 genomes] |
| rs17129617 | 0.82[ASN][1000 genomes] |
| rs17129618 | 0.83[ASN][1000 genomes] |
| rs1811493 | 0.82[ASN][1000 genomes] |
| rs2084721 | 0.82[ASN][1000 genomes] |
| rs35652246 | 0.83[ASN][1000 genomes] |
| rs3847986 | 0.85[ASN][1000 genomes] |
| rs67237911 | 0.80[ASN][1000 genomes] |
| rs7133433 | 0.81[ASN][1000 genomes] |
| rs7954132 | 0.81[ASN][1000 genomes] |
| rs921441 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3337301 | chr12:41851654-42093677 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv899040 | chr12:41905897-42181706 | Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv899041 | chr12:42005690-42072514 | Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:42000600-42012000 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
