Variant report

Variant	rs1603402
Chromosome Location	chr8:50628821-50628822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12547593	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12550431	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13251649	0.92[EUR][1000 genomes]
rs13254152	0.92[EUR][1000 genomes]
rs13255488	0.92[EUR][1000 genomes]
rs13266251	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390585	0.92[EUR][1000 genomes]
rs1496312	0.87[ASN][1000 genomes]
rs1603398	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1603401	0.92[EUR][1000 genomes]
rs1982925	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2029896	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2029897	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2047304	0.92[EUR][1000 genomes]
rs2385531	0.91[CHB][hapmap];0.93[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4873358	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4873367	0.90[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6989635	0.92[EUR][1000 genomes]
rs6999734	0.92[EUR][1000 genomes]
rs6999785	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7818806	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7827876	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7830009	0.92[EUR][1000 genomes]
rs7836512	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7836932	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7838183	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917031	chr8:50207246-50709286	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2759612	chr8:50415233-50657352	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2758157	chr8:50415863-50657352	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv890863	chr8:50430756-50639293	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50626600-50635200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:50628200-50630200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:50628200-50630800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:50628600-50629000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr8:50628600-50629000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr8:50628600-50629600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr8:50628600-50629600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr8:50628600-50630000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr8:50628600-50630200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:50628600-50630400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr8:50628800-50629000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr8:50628800-50630400	Enhancers	HUES64 Cell Line	embryonic stem cell

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