Variant report

Variant	rs1603981
Chromosome Location	chr3:25184956-25184957
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6765032	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7620023	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9310772	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013446	chr3:25176609-25221334	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25184200-25185000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:25184200-25185000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:25184200-25186200	Enhancers	Fetal Lung	lung
4	chr3:25184600-25185000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:25184600-25185200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:25184600-25185200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr3:25184600-25185400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:25184600-25185400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:25184600-25185400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:25184600-25185600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr3:25184600-25187400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:25184800-25185000	Enhancers	Fetal Stomach	stomach
13	chr3:25184800-25185200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr3:25184800-25185400	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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