Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10472976	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10941251	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11951251	0.93[ASN][1000 genomes]
rs11960006	0.93[ASN][1000 genomes]
rs12654422	0.93[ASN][1000 genomes]
rs12656037	0.93[ASN][1000 genomes]
rs12657378	0.93[ASN][1000 genomes]
rs12657936	0.93[ASN][1000 genomes]
rs1508650	0.88[ASN][1000 genomes]
rs1508651	0.88[ASN][1000 genomes]
rs1508652	0.88[ASN][1000 genomes]
rs1508653	0.88[ASN][1000 genomes]
rs1848442	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1994928	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2088068	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4623125	0.93[ASN][1000 genomes]
rs4703419	0.93[ASN][1000 genomes]
rs60285353	0.93[ASN][1000 genomes]
rs62353010	0.93[ASN][1000 genomes]
rs7702882	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7720593	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35600400-35601800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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