Variant report

Variant	rs160602
Chromosome Location	chr7:100383605-100383606
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs221005	0.94[ASN][1000 genomes]
rs221805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2734880	0.84[EUR][1000 genomes]
rs314296	1.00[ASN][1000 genomes]
rs314298	0.85[EUR][1000 genomes]
rs314300	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs314304	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs314305	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs314306	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs314307	0.89[ASN][1000 genomes]
rs314311	0.82[ASN][1000 genomes]
rs314334	0.97[EUR][1000 genomes]
rs314335	0.97[EUR][1000 genomes]
rs314336	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs314337	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs314339	0.95[EUR][1000 genomes]
rs314342	0.94[ASN][1000 genomes]
rs314345	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs314346	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs314354	0.94[ASN][1000 genomes]
rs314360	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs314361	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs314364	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs314365	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs314366	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71557203	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829095	chr7:99814675-100494084	Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	393 gene(s)	inside rSNPs	diseases
2	nsv470381	chr7:100240191-100431980	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv1020837	chr7:100313122-100508635	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
4	nsv888796	chr7:100313420-100423365	Genic enhancers Strong transcription Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	esv1832517	chr7:100355490-100749246	Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
6	esv2758125	chr7:100355490-100749246	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
7	esv2759547	chr7:100355490-100749246	Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
8	nsv464647	chr7:100374087-100497131	Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
9	nsv607965	chr7:100374087-100497131	Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
10	nsv1032673	chr7:100382250-100606794	Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:100382600-100383800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:100382600-100386600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:100382600-100391600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr7:100382600-100400800	Weak transcription	Right Atrium	heart
5	chr7:100382800-100391600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:100383400-100383800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:100383400-100383800	Active TSS	Primary T cells from cord blood	blood
8	chr7:100383400-100383800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr7:100383600-100383800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:100383600-100383800	ZNF genes & repeats	Aorta	Aorta
11	chr7:100383600-100383800	Bivalent Enhancer	Fetal Intestine Large	intestine
12	chr7:100383600-100383800	Bivalent Enhancer	Fetal Stomach	stomach
13	chr7:100383600-100383800	Enhancers	Spleen	Spleen
14	chr7:100383600-100384000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr7:100383600-100384000	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr7:100383600-100384200	Enhancers	Primary hematopoietic stem cells	blood
17	chr7:100383600-100384200	Enhancers	Fetal Thymus	thymus

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