Variant report

Variant	rs1607697
Chromosome Location	chr16:65051121-65051122
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv833260	chr16:65050647-65218759	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65025800-65051400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr16:65036000-65051400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr16:65039000-65061200	Weak transcription	Aorta	Aorta
4	chr16:65039000-65089600	Weak transcription	Fetal Intestine Large	intestine
5	chr16:65039200-65068800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr16:65039600-65079800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr16:65039800-65057400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr16:65040600-65086000	Weak transcription	HMEC	breast
9	chr16:65041000-65059200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr16:65041200-65072400	Weak transcription	Fetal Kidney	kidney
11	chr16:65044600-65064000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr16:65044600-65069000	Weak transcription	Brain Germinal Matrix	brain
13	chr16:65046400-65075600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr16:65046600-65052000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr16:65046800-65051200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr16:65046800-65055000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr16:65047200-65058800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr16:65047200-65059000	Weak transcription	HSMMtube	muscle
19	chr16:65047200-65061200	Weak transcription	NHLF	lung
20	chr16:65047200-65078400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr16:65047400-65052000	Weak transcription	Ovary	ovary
22	chr16:65047400-65058800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr16:65049400-65051200	Enhancers	Brain Hippocampus Middle	brain
24	chr16:65049400-65051400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr16:65049600-65051200	Enhancers	Brain Cingulate Gyrus	brain
26	chr16:65049800-65051200	Enhancers	Brain Substantia Nigra	brain
27	chr16:65049800-65052600	Strong transcription	Osteobl	bone
28	chr16:65049800-65054200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr16:65050000-65052600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr16:65050000-65052800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr16:65050000-65052800	Strong transcription	NH-A	brain
32	chr16:65050000-65056800	Weak transcription	Fetal Stomach	stomach
33	chr16:65050400-65052800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr16:65050400-65056800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr16:65050600-65051200	Strong transcription	Fetal Brain Male	brain
36	chr16:65050600-65051200	ZNF genes & repeats	Fetal Muscle Leg	muscle
37	chr16:65050800-65051200	Genic enhancers	NHDF-Ad	bronchial
38	chr16:65050800-65052800	Strong transcription	Fetal Lung	lung
39	chr16:65050800-65053000	Strong transcription	HSMM	muscle
40	chr16:65050800-65061200	Weak transcription	Brain Anterior Caudate	brain
41	chr16:65051000-65051200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr16:65051000-65052800	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr16:65051000-65053000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr16:65051000-65062400	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr16:65051000-65071200	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links