Variant report

Variant	rs1608158
Chromosome Location	chr7:150246984-150246985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 189 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:179)

rs_ID	r²[population]
rs10254829	0.91[CEU][hapmap];0.85[CHB][hapmap];0.90[GIH][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes]
rs10952277	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11486916	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11761189	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11764032	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11764049	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11764138	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11764186	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11764483	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11766379	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11767574	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11767598	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11769703	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11769828	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770334	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11771827	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11975366	0.84[EUR][1000 genomes]
rs11981436	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11981515	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11981976	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11982037	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12154687	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1234357	0.93[CHB][hapmap]
rs12397707	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12530578	0.92[EUR][1000 genomes]
rs12532846	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12533735	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12535208	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12535647	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537789	0.95[CEU][hapmap];0.92[CHB][hapmap];0.87[EUR][1000 genomes]
rs12540251	0.87[EUR][1000 genomes]
rs12666582	0.89[EUR][1000 genomes]
rs12671272	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12671275	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12673131	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12673133	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12673168	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12673197	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12703091	0.89[ASN][1000 genomes]
rs13220967	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13221085	0.89[EUR][1000 genomes]
rs13222892	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13223299	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13223343	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13223607	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13223653	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13225097	0.89[EUR][1000 genomes]
rs13225393	0.89[EUR][1000 genomes]
rs13225610	0.89[EUR][1000 genomes]
rs13226190	0.85[ASN][1000 genomes]
rs13226396	0.87[EUR][1000 genomes]
rs13230583	0.89[ASN][1000 genomes]
rs13232683	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13232785	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13232989	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13234724	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs13235529	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13235632	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13235707	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13236567	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13236678	0.90[EUR][1000 genomes]
rs13238412	0.89[ASN][1000 genomes]
rs13240099	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13240106	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1578916	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17542143	0.85[ASN][1000 genomes]
rs17837503	0.87[EUR][1000 genomes]
rs2204131	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2373805	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2373806	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2888664	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34035483	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34079857	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34097488	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34118164	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34176120	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34208822	0.87[EUR][1000 genomes]
rs34476103	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34534990	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34803745	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34815266	0.87[EUR][1000 genomes]
rs34822032	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34900736	0.89[EUR][1000 genomes]
rs34912132	0.87[EUR][1000 genomes]
rs34940374	0.83[ASN][1000 genomes]
rs34990905	0.88[EUR][1000 genomes]
rs35113886	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35114152	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35182796	0.90[EUR][1000 genomes]
rs35188092	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35222868	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35233281	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35241484	0.91[EUR][1000 genomes]
rs35276692	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35283918	0.82[ASN][1000 genomes]
rs35342751	0.89[ASN][1000 genomes]
rs35346811	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35408569	0.84[EUR][1000 genomes]
rs35428045	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35432864	0.90[EUR][1000 genomes]
rs35464700	0.87[EUR][1000 genomes]
rs35492812	0.87[EUR][1000 genomes]
rs35512856	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35659213	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35731211	0.87[EUR][1000 genomes]
rs35737876	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35760614	0.82[ASN][1000 genomes]
rs35821632	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35873531	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36200127	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3735080	0.95[CEU][hapmap];0.85[CHB][hapmap];0.83[GIH][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3735086	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];0.83[JPT][hapmap];0.82[MEX][hapmap];0.82[MKK][hapmap];0.89[ASN][1000 genomes]
rs3807382	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4339549	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4339550	0.92[EUR][1000 genomes]
rs4367453	0.89[EUR][1000 genomes]
rs4382385	0.92[EUR][1000 genomes]
rs4543461	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4573169	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4584065	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55681398	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56272736	0.84[EUR][1000 genomes]
rs56325059	0.89[ASN][1000 genomes]
rs57729315	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57899656	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58391005	0.92[EUR][1000 genomes]
rs59468128	0.81[ASN][1000 genomes]
rs60213500	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62491810	0.89[ASN][1000 genomes]
rs62491812	0.85[ASN][1000 genomes]
rs62491814	0.83[ASN][1000 genomes]
rs62502277	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62502293	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62502294	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62502295	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62502296	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62502297	0.91[EUR][1000 genomes]
rs62502298	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62502300	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62502326	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62502342	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62502349	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62503201	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62504164	0.87[EUR][1000 genomes]
rs62504165	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6942848	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6950079	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6950421	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6951360	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6954076	0.90[EUR][1000 genomes]
rs6954709	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6954884	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6954937	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6968256	0.85[EUR][1000 genomes]
rs6969250	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6971133	0.89[EUR][1000 genomes]
rs6971221	0.90[EUR][1000 genomes]
rs6971529	0.90[EUR][1000 genomes]
rs6978270	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6978778	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71539836	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73161782	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73163513	0.92[EUR][1000 genomes]
rs7455366	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781524	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7781834	0.88[EUR][1000 genomes]
rs7781992	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7783326	0.91[EUR][1000 genomes]
rs7784050	0.91[CEU][hapmap];0.85[CHB][hapmap];0.91[EUR][1000 genomes]
rs7784108	0.91[CEU][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs7788112	0.89[EUR][1000 genomes]
rs7788300	0.89[EUR][1000 genomes]
rs7788683	0.89[EUR][1000 genomes]
rs7788885	0.89[EUR][1000 genomes]
rs7796338	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7798629	0.86[EUR][1000 genomes]
rs7808446	0.91[CEU][hapmap];0.85[CHB][hapmap];0.91[EUR][1000 genomes]
rs9768447	0.90[EUR][1000 genomes]
rs9770112	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv1025129	chr7:150146593-150266217	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv3395746	chr7:150181141-150300680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	esv3341786	chr7:150220353-150269134	Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2757243	chr7:150233827-150246984	ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv2759572	chr7:150233827-150246984	ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1608158	ZNF282	cis	parietal	SCAN
rs1608158	GIMAP4	cis	parietal	SCAN
rs1608158	FLJ37035	trans	parietal	SCAN
rs1608158	GIMAP4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150246800-150247600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr7:150246800-150247800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links