Variant report

Variant	rs1608184
Chromosome Location	chr8:104285521-104285522
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:104285055..104288416-chr8:104382209..104384778,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164932	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12156164	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12675012	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12680121	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1389689	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1494279	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1610204	1.00[AFR][1000 genomes]
rs16870276	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17801975	1.00[AFR][1000 genomes]
rs17802011	1.00[AFR][1000 genomes]
rs2687355	1.00[AFR][1000 genomes]
rs2934725	1.00[AFR][1000 genomes]
rs62525463	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs62525466	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs62525469	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs62525470	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs62527572	1.00[AFR][1000 genomes]
rs62527574	1.00[AFR][1000 genomes]
rs62527608	1.00[AFR][1000 genomes]
rs62527612	1.00[AFR][1000 genomes]
rs62527613	1.00[AFR][1000 genomes]
rs62528473	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs62528474	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs62528478	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6468868	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7005750	1.00[AFR][1000 genomes]
rs7815503	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7841861	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs827525	1.00[AFR][1000 genomes]
rs827531	1.00[AFR][1000 genomes]
rs827543	1.00[AFR][1000 genomes]
rs827549	1.00[AFR][1000 genomes]
rs861169	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	esv1848810	chr8:104128496-104369288	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	esv1844303	chr8:104128696-104369090	Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv1015965	chr8:104192086-104361108	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv1017326	chr8:104236193-104313235	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104284000-104289600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:104284400-104287000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:104284800-104289600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:104284800-104295400	Weak transcription	Aorta	Aorta

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