Variant report

Variant	rs1608598
Chromosome Location	chr3:98918124-98918125
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1066358	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1066359	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1066360	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1066361	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1066362	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1066364	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1066365	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1066366	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1066367	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1082506	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1082507	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1082508	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1082509	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1082510	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1082512	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1092312	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11720946	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17770503	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17770521	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1818726	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1818727	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2681447	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2682410	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2687667	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4928154	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58807394	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59080898	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67357616	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67639354	0.93[ASN][1000 genomes]
rs68096327	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73147986	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73149623	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs774972	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9968233	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv999649	chr3:98815244-98947271	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv536664	chr3:98815244-98947271	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1012264	chr3:98855069-98949409	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1000298	chr3:98855939-98949409	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1004438	chr3:98863348-98949409	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv997372	chr3:98864056-98953749	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1008663	chr3:98867385-98953749	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3518631	chr3:98868311-98921967	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	esv3518632	chr3:98868311-98921967	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv998521	chr3:98877662-98949409	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv1014277	chr3:98877662-98953749	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv1004810	chr3:98888976-98953749	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv3915	chr3:98892668-98940053	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv1010759	chr3:98893510-98949409	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv1010512	chr3:98893510-98953749	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv1012359	chr3:98893510-98965013	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	esv1798220	chr3:98894142-99020463	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	esv1805073	chr3:98894246-98930445	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
23	esv1829946	chr3:98894246-98930445	Enhancers Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
24	nsv508229	chr3:98896531-98918586	Weak transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
25	nsv1003886	chr3:98897698-98949302	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
26	nsv1010851	chr3:98897698-98953749	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
27	esv1804724	chr3:98899125-98919134	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
28	esv1818384	chr3:98899125-98919134	Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
29	esv1824492	chr3:98899125-98919134	Weak transcription Active TSS ZNF genes & repeats Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
30	esv1826526	chr3:98899125-98919134	Enhancers Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
31	esv1842248	chr3:98899125-98919134	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
32	nsv1014172	chr3:98900805-98949302	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
33	nsv1011995	chr3:98900805-98949409	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98918000-98918400	Enhancers	Fetal Thymus	thymus

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