Variant report

Variant	rs1608672
Chromosome Location	chr7:80194304-80194305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80179936..80183033-chr7:80192105..80194774,3	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10429164	0.81[JPT][hapmap]
rs10499857	0.89[CEU][hapmap];0.82[JPT][hapmap]
rs10499858	0.80[CEU][hapmap];0.82[JPT][hapmap]
rs1104265	1.00[ASN][1000 genomes]
rs11765071	0.98[ASN][1000 genomes]
rs11769655	0.83[EUR][1000 genomes]
rs11771839	0.89[CEU][hapmap];0.82[JPT][hapmap]
rs11971740	0.82[JPT][hapmap]
rs11974777	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11983803	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1334511	0.81[JPT][hapmap]
rs1360741	0.82[JPT][hapmap]
rs1524595	0.81[EUR][1000 genomes]
rs17154181	0.82[JPT][hapmap]
rs1851936	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2204355	1.00[ASN][1000 genomes]
rs3173799	0.93[JPT][hapmap]
rs3211817	0.82[JPT][hapmap]
rs3211828	0.82[JPT][hapmap]
rs3211830	0.82[JPT][hapmap]
rs3211851	0.86[JPT][hapmap]
rs3211867	0.87[JPT][hapmap]
rs4112274	0.81[EUR][1000 genomes]
rs41364549	0.82[JPT][hapmap]
rs59068651	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59626173	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6943158	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9641866	0.81[JPT][hapmap]
rs9784998	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030961	chr7:80032525-80197468	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv538991	chr7:80032525-80197468	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv949205	chr7:80039695-80211200	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv888525	chr7:80148668-80232471	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv1017381	chr7:80187725-80224314	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80192400-80194400	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr7:80192400-80195000	Enhancers	Placenta	Placenta
3	chr7:80192800-80194600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:80192800-80194600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr7:80193200-80195200	Weak transcription	Right Ventricle	heart
6	chr7:80193200-80196000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:80193800-80196400	Weak transcription	Fetal Intestine Small	intestine
8	chr7:80193800-80204000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:80194200-80195400	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links