Variant report
| Variant | rs1609424 |
|---|---|
| Chromosome Location | chr4:95301887-95301888 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10856909 | 0.81[CEU][hapmap] |
| rs11097417 | 0.82[CEU][hapmap] |
| rs11097421 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs11724295 | 0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11726608 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11734869 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs12507134 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs12511627 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12511686 | 0.81[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs12512832 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs12646467 | 0.86[CEU][hapmap] |
| rs13133738 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs17311521 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs17377118 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs17565759 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1968332 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs4626213 | 0.83[EUR][1000 genomes] |
| rs4699459 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4699464 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs57939388 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs62320931 | 0.81[AMR][1000 genomes] |
| rs62320932 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6841656 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv993495 | chr4:94992315-95482578 | Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| 2 | nsv594901 | chr4:95254730-95493246 | Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv1003743 | chr4:95255957-95469831 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:95291800-95306200 | Weak transcription | K562 | blood |
| 2 | chr4:95299600-95303200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
