Variant report

Variant	rs1609883
Chromosome Location	chr2:190657600-190657601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10195109	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11885423	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12052909	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12618231	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12619808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12622902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1317751	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1550388	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16831925	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16831939	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16831955	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1898560	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1966729	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2264018	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2289404	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3762545	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3791767	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3791770	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3791773	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4666781	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4666783	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4667306	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55675300	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55792400	0.88[EUR][1000 genomes]
rs5742933	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5742998	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5743017	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5743032	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5743052	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5743061	0.84[EUR][1000 genomes]
rs5743063	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62184283	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62184286	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62185871	0.88[EUR][1000 genomes]
rs6434363	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6434365	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6717922	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6719224	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7557519	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs1609883	ORMDL1	cis	Skin Sun Exposed Lower leg	GTEx
rs1609883	ORMDL1	Cis_1M	lymphoblastoid	RTeQTL
rs1609883	PMS1	Cis_1M	lymphoblastoid	RTeQTL
rs1609883	ORMDL1	cis	Heart Left Ventricle	GTEx
rs1609883	ASNSD1	cis	Whole Blood	GTEx
rs1609883	ORMDL1	cis	Muscle Skeletal	GTEx
rs1609883	ORMDL1	cis	Nerve Tibial	GTEx

Chromatin state (count:147 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190649600-190658600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:190649800-190657600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr2:190649800-190658600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:190649800-190662200	Weak transcription	Aorta	Aorta
5	chr2:190649800-190662200	Weak transcription	Left Ventricle	heart
6	chr2:190649800-190662800	Weak transcription	Lung	lung
7	chr2:190649800-190667200	Weak transcription	Pancreas	Pancrea
8	chr2:190649800-190675200	Weak transcription	Esophagus	oesophagus
9	chr2:190649800-190713400	Weak transcription	Gastric	stomach
10	chr2:190650000-190688200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr2:190650200-190657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr2:190650200-190658600	Weak transcription	Ovary	ovary
13	chr2:190650200-190662800	Weak transcription	Psoas Muscle	Psoas
14	chr2:190650200-190668200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr2:190650200-190669200	Weak transcription	Right Ventricle	heart
16	chr2:190650200-190673000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:190650200-190673200	Weak transcription	Small Intestine	intestine
18	chr2:190650400-190657600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr2:190650400-190657600	Weak transcription	Primary T cells from cord blood	blood
20	chr2:190650400-190657600	Weak transcription	Brain Angular Gyrus	brain
21	chr2:190650400-190657600	Weak transcription	Fetal Intestine Small	intestine
22	chr2:190650400-190659600	Weak transcription	HSMMtube	muscle
23	chr2:190650400-190662200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr2:190650400-190662200	Weak transcription	Brain Substantia Nigra	brain
25	chr2:190650400-190662600	Weak transcription	Brain Hippocampus Middle	brain
26	chr2:190650400-190662800	Weak transcription	Colon Smooth Muscle	Colon
27	chr2:190650400-190664600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr2:190650400-190666800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr2:190650400-190667400	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr2:190650400-190670400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr2:190650400-190675800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr2:190650400-190686800	Weak transcription	Thymus	Thymus
33	chr2:190650400-190688400	Weak transcription	Colonic Mucosa	Colon
34	chr2:190650400-190689800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr2:190650400-190711400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr2:190650600-190657600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr2:190650600-190657600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr2:190650600-190657600	Weak transcription	Duodenum Mucosa	Duodenum
39	chr2:190650600-190657600	Weak transcription	Fetal Lung	lung
40	chr2:190650600-190657600	Weak transcription	Fetal Stomach	stomach
41	chr2:190650600-190657800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr2:190650600-190657800	Weak transcription	Fetal Kidney	kidney
43	chr2:190650600-190658400	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr2:190650600-190659600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr2:190650600-190661400	Weak transcription	K562	blood
46	chr2:190650600-190661800	Weak transcription	NHEK	skin
47	chr2:190650600-190664000	Weak transcription	NHLF	lung
48	chr2:190650600-190668200	Weak transcription	Fetal Brain Female	brain
49	chr2:190650600-190683200	Weak transcription	Fetal Brain Male	brain
50	chr2:190650600-190688800	Weak transcription	Fetal Heart	heart

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