Variant report

Variant	rs1611283
Chromosome Location	chr6:29730128-29730129
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:29728325..29730576-chr6:29733816..29735445,2	K562	blood:
2	chr6:29725320..29727210-chr6:29727863..29730824,2	K562	blood:
3	chr6:29719431..29722230-chr6:29728984..29731849,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272236	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1611285	0.81[ASN][1000 genomes]
rs2517933	0.81[ASN][1000 genomes]
rs2517934	0.81[ASN][1000 genomes]
rs2517938	0.81[ASN][1000 genomes]
rs2517941	0.81[ASN][1000 genomes]
rs2517943	0.81[ASN][1000 genomes]
rs2523385	0.81[ASN][1000 genomes]
rs2523407	0.81[ASN][1000 genomes]
rs2844833	0.81[ASN][1000 genomes]
rs2844845	0.81[ASN][1000 genomes]
rs422343	0.81[ASN][1000 genomes]
rs730858	0.81[ASN][1000 genomes]
rs9258255	0.81[ASN][1000 genomes]
rs9258278	0.81[ASN][1000 genomes]
rs9258285	0.97[ASN][1000 genomes]
rs9258294	0.81[ASN][1000 genomes]
rs9258305	0.81[ASN][1000 genomes]
rs9258384	0.81[ASN][1000 genomes]
rs9258393	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20940	chr6:29653954-29923410	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv428475	chr6:29659525-29763392	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv428139	chr6:29659525-29892317	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv427749	chr6:29659525-29975144	Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv508397	chr6:29663132-29761448	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	esv1794141	chr6:29670915-29765814	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv10809	chr6:29692573-29794119	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv883532	chr6:29703262-29814963	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	esv3441842	chr6:29715749-29942950	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
10	nsv883535	chr6:29725321-29741338	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	esv11180	chr6:29729381-29800066	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29728000-29730400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:29728200-29730400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:29728400-29730200	Weak transcription	HUVEC	blood vessel
4	chr6:29728400-29730400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:29728400-29730800	Weak transcription	Spleen	Spleen
6	chr6:29728600-29730200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:29728600-29730200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:29728600-29730200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:29728600-29730400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:29728600-29730400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:29728600-29730400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:29728600-29730600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:29728600-29730600	Weak transcription	GM12878-XiMat	blood
14	chr6:29728600-29737200	Weak transcription	Lung	lung
15	chr6:29728800-29730600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:29728800-29731200	Weak transcription	Osteobl	bone
17	chr6:29729000-29733800	Enhancers	HMEC	breast
18	chr6:29729400-29733400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:29729600-29733200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:29729600-29733400	Enhancers	NHEK	skin
21	chr6:29729600-29733600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:29729600-29733600	Enhancers	Esophagus	oesophagus
23	chr6:29729800-29730200	Enhancers	Hela-S3	cervix
24	chr6:29729800-29733800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:29730000-29732000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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