Variant report

Variant	rs1613696
Chromosome Location	chr1:10838798-10838799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:10837835..10840476-chr1:10895758..10897278,2	MCF-7	breast:
2	chr1:10837831..10840252-chr1:10841183..10844636,3	K562	blood:
3	chr1:10837061..10839870-chr1:10864060..10865858,2	MCF-7	breast:
4	chr1:10838788..10840629-chr1:10854389..10855939,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11804446	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014818	chr1:10675978-10846823	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv29966	chr1:10676800-10874152	Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv464838	chr1:10684098-10842021	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv545400	chr1:10684098-10842021	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv525693	chr1:10694125-10840905	Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv870849	chr1:10694125-10894724	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv529981	chr1:10697093-11353487	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
8	nsv1014705	chr1:10703941-10840824	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv832314	chr1:10704811-10859919	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	esv2757723	chr1:10742502-11055147	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
11	esv2758921	chr1:10742502-11055147	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	nsv871772	chr1:10832322-10894724	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv3435817	chr1:10835465-10839763	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3322305	chr1:10835965-10840463	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3443222	chr1:10836465-10839763	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10832000-10839000	Enhancers	Esophagus	oesophagus
2	chr1:10832600-10853400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:10834200-10839400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:10834400-10839400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:10835800-10839400	Weak transcription	Brain Angular Gyrus	brain
6	chr1:10835800-10840800	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr1:10836600-10839000	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr1:10836800-10839800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr1:10837000-10838800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr1:10837200-10838800	Weak transcription	Lung	lung
11	chr1:10837200-10839400	Weak transcription	Pancreas	Pancrea
12	chr1:10837200-10841000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr1:10837400-10838800	Weak transcription	Right Atrium	heart
14	chr1:10837400-10841200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr1:10838000-10838800	Flanking Active TSS	Stomach Mucosa	stomach
16	chr1:10838000-10841200	Weak transcription	Gastric	stomach
17	chr1:10838200-10838800	Enhancers	NHEK	skin
18	chr1:10838200-10839400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:10838200-10840600	Enhancers	Colon Smooth Muscle	Colon
20	chr1:10838200-10840600	Enhancers	HMEC	breast
21	chr1:10838200-10841800	Enhancers	Psoas Muscle	Psoas
22	chr1:10838400-10838800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
23	chr1:10838400-10838800	Genic enhancers	Stomach Smooth Muscle	stomach
24	chr1:10838400-10839200	Enhancers	Right Ventricle	heart
25	chr1:10838400-10841000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr1:10838600-10838800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr1:10838600-10838800	Active TSS	Colonic Mucosa	Colon
28	chr1:10838600-10838800	Flanking Active TSS	Duodenum Mucosa	Duodenum
29	chr1:10838600-10839000	Enhancers	Fetal Muscle Leg	muscle
30	chr1:10838600-10839000	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr1:10838600-10839200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
32	chr1:10838600-10839400	Enhancers	A549	lung
33	chr1:10838600-10840400	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr1:10838600-10841000	Enhancers	Fetal Intestine Small	intestine
35	chr1:10838600-10842200	Weak transcription	Fetal Kidney	kidney
36	chr1:10838600-10843200	Enhancers	Left Ventricle	heart
37	chr1:10838600-10852400	Enhancers	Fetal Heart	heart

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