Variant report

Variant	rs1614514
Chromosome Location	chr19:35697103-35697104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:35695503..35699438-chr19:35738444..35740953,4	MCF-7	breast:
2	chr19:35690573..35693790-chr19:35694961..35698637,4	K562	blood:
3	chr19:35655231..35657834-chr19:35695851..35698454,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LSR-1	chr19:35697056-35697295	XLOC_013049
2	lnc-LSR-1	chr19:35697056-35697295	XLOC_013049

Variant related genes	Relation type
ENSG00000105699	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11084807	0.84[EUR][1000 genomes]
rs12461622	0.82[EUR][1000 genomes]
rs12978960	0.82[EUR][1000 genomes]
rs1614559	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs1633923	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs2018697	0.82[EUR][1000 genomes]
rs4806113	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs517986	0.82[EUR][1000 genomes]
rs565918	0.82[EUR][1000 genomes]
rs6510471	0.90[CEU][hapmap]
rs7250545	0.81[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv2470	chr19:35655281-35702565	Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35693400-35699400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr19:35693400-35707000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr19:35693600-35698800	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr19:35693600-35701800	Weak transcription	Right Atrium	heart
5	chr19:35693800-35697200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr19:35694000-35697600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr19:35694000-35704400	Enhancers	Primary T cells fromperipheralblood	blood
8	chr19:35694200-35697200	Enhancers	Primary B cells from peripheral blood	blood
9	chr19:35694200-35697400	Enhancers	Primary T cells from cord blood	blood
10	chr19:35694200-35699200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr19:35694200-35708200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr19:35694400-35697400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr19:35694600-35697200	Enhancers	Primary B cells from cord blood	blood
14	chr19:35694600-35697200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr19:35694600-35699200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr19:35694800-35698000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr19:35694800-35699000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr19:35694800-35700200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr19:35695000-35697200	Enhancers	Spleen	Spleen
20	chr19:35695000-35698800	Enhancers	Fetal Thymus	thymus
21	chr19:35695200-35699200	Enhancers	Primary hematopoietic stem cells	blood
22	chr19:35695400-35698000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
23	chr19:35695800-35697200	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr19:35696000-35697600	Enhancers	Stomach Mucosa	stomach
25	chr19:35696200-35698000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr19:35696200-35698000	Enhancers	Thymus	Thymus
27	chr19:35696200-35698000	Flanking Active TSS	GM12878-XiMat	blood
28	chr19:35696400-35697200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr19:35696600-35697400	Enhancers	Small Intestine	intestine
30	chr19:35696600-35700200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr19:35696600-35701800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr19:35696600-35704600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr19:35696800-35697200	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr19:35696800-35697200	Enhancers	Fetal Intestine Small	intestine
35	chr19:35696800-35697400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
36	chr19:35696800-35704600	Weak transcription	Colonic Mucosa	Colon
37	chr19:35697000-35697200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr19:35697000-35697800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
39	chr19:35697000-35697800	Flanking Active TSS	Duodenum Mucosa	Duodenum
40	chr19:35697000-35698000	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr19:35697000-35699000	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links