Variant report

Variant	rs1618007
Chromosome Location	chr15:42366754-42366755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12593957	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1474063	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1599955	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1668542	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1668543	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1668544	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1668545	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1668546	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1668574	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1668587	0.97[ASN][1000 genomes]
rs1668588	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1668597	0.92[EUR][1000 genomes]
rs1668598	0.95[EUR][1000 genomes]
rs1712412	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1712413	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1712414	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1712415	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1712416	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1712427	0.81[CHB][hapmap];0.84[EUR][1000 genomes]
rs1712431	0.91[CHB][hapmap];0.95[EUR][1000 genomes]
rs1712433	0.91[CHB][hapmap];0.95[EUR][1000 genomes]
rs1712438	0.95[EUR][1000 genomes]
rs55818565	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58770075	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs632900	0.90[ASN][1000 genomes]
rs72727720	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72727721	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72727723	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72727724	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72727725	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74008961	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74011710	0.81[ASN][1000 genomes]
rs776686	0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs776690	0.91[CHB][hapmap];0.81[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs776693	0.91[CHB][hapmap];0.81[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776694	0.91[CHB][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776697	0.91[CHB][hapmap];0.81[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776699	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs776701	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8028419	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs810325	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv1035998	chr15:42098896-42434254	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv471683	chr15:42334375-42502982	Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1043641	chr15:42336584-42381240	Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv904131	chr15:42343794-42390223	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv904132	chr15:42343794-42398046	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42363400-42371600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:42363600-42375800	Weak transcription	Esophagus	oesophagus
3	chr15:42365000-42368800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:42366200-42369800	Weak transcription	Stomach Mucosa	stomach

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