Variant report

Variant	rs1618440
Chromosome Location	chr19:51477528-51477529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1701951	0.83[YRI][hapmap]
rs268883	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064207	chr19:51474525-51497278	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3440392	chr19:51477165-51480013	Enhancers Bivalent Enhancer Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3329302	chr19:51477315-51479788	Bivalent Enhancer Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51472800-51482200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr19:51473000-51480600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr19:51473200-51477600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr19:51473200-51479000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr19:51473200-51479000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr19:51473200-51480800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr19:51473200-51482400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr19:51473800-51479000	Weak transcription	NHEK	skin
9	chr19:51474800-51479000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr19:51474800-51479000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr19:51474800-51482200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr19:51476200-51477800	Enhancers	Placenta Amnion	Placenta Amnion
13	chr19:51476200-51479000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr19:51476400-51479000	Weak transcription	HMEC	breast
15	chr19:51476600-51479000	Weak transcription	Esophagus	oesophagus
16	chr19:51477400-51478000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr19:51477400-51479200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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