Variant report

Variant	rs1618889
Chromosome Location	chr2:113855863-113855864
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10199363	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11123160	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11693683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1665186	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1665188	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1688072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1688077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2121326	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28928293	0.88[YRI][hapmap]
rs315920	0.80[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs315921	0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs315922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs315923	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs315924	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs315928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67213447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7574787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7578112	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1007254	chr2:113726982-113887782	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv535894	chr2:113726982-113887782	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv1003928	chr2:113846503-113887782	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3323154	chr2:113855481-113859679	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113855000-113856000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr2:113855200-113856400	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr2:113855400-113856000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
4	chr2:113855400-113856200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
5	chr2:113855600-113856000	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr2:113855600-113856000	Enhancers	Stomach Mucosa	stomach
7	chr2:113855800-113856000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
8	chr2:113855800-113856000	Flanking Active TSS	Duodenum Mucosa	Duodenum
9	chr2:113855800-113856000	Flanking Active TSS	GM12878-XiMat	blood
10	chr2:113855800-113856200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr2:113855800-113856200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr2:113855800-113856200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
13	chr2:113855800-113856200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
14	chr2:113855800-113856200	Enhancers	Lung	lung
15	chr2:113855800-113856400	Enhancers	Primary B cells from peripheral blood	blood
16	chr2:113855800-113856400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr2:113855800-113856400	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr2:113855800-113856400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr2:113855800-113856400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr2:113855800-113856600	Enhancers	Primary T cells fromperipheralblood	blood
21	chr2:113855800-113857200	Enhancers	Esophagus	oesophagus

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