The 2.0 version of rSNPBase

Variant report

Variant rs1621483
Chromosome Location chr6:38648446-38648447
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:38612800-38652800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
2 chr6:38614800-38654800 Weak transcription Brain Angular Gyrus brain
3 chr6:38615200-38649400 Weak transcription Fetal Brain Male brain
4 chr6:38640000-38649400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
5 chr6:38640000-38649400 Weak transcription Primary T killer naive cells fromperipheralblood blood
6 chr6:38640000-38652400 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr6:38640200-38650200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr6:38641000-38654800 Weak transcription Fetal Heart heart
9 chr6:38641200-38670000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
10 chr6:38641400-38649400 Weak transcription Rectal Mucosa Donor 31 rectum
11 chr6:38641600-38668000 Weak transcription NHLF lung
12 chr6:38641800-38649400 Weak transcription Primary T helper naive cells from peripheral blood blood
13 chr6:38641800-38650600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
14 chr6:38641800-38651000 Weak transcription Primary neutrophils fromperipheralblood blood
15 chr6:38641800-38654800 Weak transcription Pancreas Pancrea
16 chr6:38642000-38650800 Weak transcription Primary monocytes fromperipheralblood blood
17 chr6:38642000-38652600 Weak transcription Stomach Mucosa stomach
18 chr6:38642000-38657600 Weak transcription ES-WA7 Cell Line embryonic stem cell
19 chr6:38642200-38651400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr6:38642200-38652200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
21 chr6:38642200-38656400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr6:38642400-38649800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
23 chr6:38642400-38650200 Strong transcription Fetal Muscle Trunk muscle
24 chr6:38642400-38651200 Strong transcription Fetal Lung lung
25 chr6:38642400-38652000 Strong transcription Fetal Muscle Leg muscle
26 chr6:38642400-38652400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr6:38642400-38653600 Strong transcription Primary T helper cells fromperipheralblood blood
28 chr6:38642400-38653800 Strong transcription Dnd41 blood
29 chr6:38642400-38654000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
30 chr6:38642400-38654800 Weak transcription Psoas Muscle Psoas
31 chr6:38642400-38655200 Strong transcription NHEK skin
32 chr6:38642400-38657000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
33 chr6:38642400-38660000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr6:38642400-38665600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
35 chr6:38642600-38650000 Strong transcription Hela-S3 cervix
36 chr6:38642600-38651800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr6:38642600-38653400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr6:38642600-38653600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr6:38642600-38654600 Strong transcription iPS-20b Cell Line embryonic stem cell
40 chr6:38642600-38655000 Strong transcription HUES6 Cell Line embryonic stem cell
41 chr6:38642600-38655200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
42 chr6:38642800-38652400 Strong transcription H1 Cell Line embryonic stem cell
43 chr6:38642800-38655600 Strong transcription HUES64 Cell Line embryonic stem cell
44 chr6:38642800-38658000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr6:38642800-38669800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
46 chr6:38643000-38654000 Strong transcription Breast Myoepithelial Primary Cells Breast
47 chr6:38643200-38653800 Strong transcription Primary T cells fromperipheralblood blood
48 chr6:38643200-38656200 Strong transcription Primary hematopoietic stem cells short term culture blood
49 chr6:38643600-38649400 Weak transcription Brain Inferior Temporal Lobe brain
50 chr6:38644400-38649600 Weak transcription Rectal Smooth Muscle rectum

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015