Variant report

Variant	rs1623102
Chromosome Location	chr8:103047139-103047140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103045659..103047816-chr8:103052482..103055042,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1269698	0.83[EUR][1000 genomes]
rs1269706	0.85[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1269707	0.82[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1269708	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1269709	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1314532	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv891231	chr8:103001914-103076379	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv891232	chr8:103001914-103138045	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv891233	chr8:103001914-103162638	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv891234	chr8:103020391-103113701	Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv891235	chr8:103032394-103162638	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
7	nsv891236	chr8:103039917-103070301	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv891237	chr8:103039917-103113701	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103039400-103047200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:103039400-103050400	Weak transcription	Right Ventricle	heart
3	chr8:103046200-103050200	Weak transcription	Fetal Brain Female	brain
4	chr8:103046400-103047400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:103046400-103047400	ZNF genes & repeats	Fetal Muscle Leg	muscle
6	chr8:103046400-103047800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr8:103046600-103047200	ZNF genes & repeats	Primary T cells from cord blood	blood
8	chr8:103046600-103047200	ZNF genes & repeats	Aorta	Aorta
9	chr8:103046600-103047200	ZNF genes & repeats	Fetal Stomach	stomach
10	chr8:103046600-103047200	ZNF genes & repeats	Ovary	ovary
11	chr8:103046600-103047200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
12	chr8:103046800-103047200	ZNF genes & repeats	Left Ventricle	heart
13	chr8:103046800-103047200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
14	chr8:103047000-103047200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
15	chr8:103047000-103048200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:103047000-103050000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:103047000-103050200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr8:103047000-103050200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr8:103047000-103050200	Weak transcription	Psoas Muscle	Psoas
20	chr8:103047000-103051000	Weak transcription	Primary hematopoietic stem cells	blood

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