Variant report

Variant	rs1624486
Chromosome Location	chr7:108540170-108540171
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10251443	0.83[AMR][1000 genomes]
rs1723338	0.85[AMR][1000 genomes]
rs275541	0.83[AMR][1000 genomes]
rs275546	0.83[AMR][1000 genomes]
rs275548	1.00[AMR][1000 genomes]
rs275550	1.00[AMR][1000 genomes]
rs275551	1.00[AMR][1000 genomes]
rs848354	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs848355	0.85[AMR][1000 genomes]
rs848359	0.85[AMR][1000 genomes]
rs848371	0.85[AMR][1000 genomes]
rs848372	0.85[AMR][1000 genomes]
rs848391	0.83[AMR][1000 genomes]
rs860229	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1031096	chr7:108334543-108596014	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108535000-108540600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:108535200-108540600	Weak transcription	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links