Variant report

Variant	rs1625571
Chromosome Location	chr6:37174028-37174029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36997224..37001862-chr6:37173680..37176936,6	K562	blood:
2	chr6:37142590..37145563-chr6:37170274..37176000,5	K562	blood:
3	chr6:37136875..37138408-chr6:37173630..37176178,2	K562	blood:
4	chr6:37138941..37142490-chr6:37173522..37176911,4	K562	blood:
5	chr6:37156818..37161104-chr6:37172850..37175996,3	K562	blood:
6	chr6:36987477..36989707-chr6:37172018..37174829,3	K562	blood:
7	chr6:37155352..37158318-chr6:37172850..37175746,2	K562	blood:
8	chr6:37015294..37018707-chr6:37173927..37177925,4	K562	blood:
9	chr6:36990365..36993008-chr6:37173056..37174910,2	MCF-7	breast:
10	chr6:37143067..37148225-chr6:37171800..37179920,10	K562	blood:
11	chr6:37149902..37152655-chr6:37173951..37175551,2	K562	blood:
12	chr6:37169595..37171540-chr6:37173349..37175303,2	K562	blood:
13	chr6:37022772..37024698-chr6:37171655..37174506,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000252687	Chromatin interaction
ENSG00000137193	Chromatin interaction
ENSG00000146192	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1680005	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1757008	0.95[ASN][1000 genomes]
rs1757009	0.95[ASN][1000 genomes]
rs1757010	0.95[ASN][1000 genomes]
rs1757011	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1766683	0.95[ASN][1000 genomes]
rs1766684	0.88[ASN][1000 genomes]
rs2622890	0.92[ASN][1000 genomes]
rs2776795	0.94[ASN][1000 genomes]
rs2776796	0.95[ASN][1000 genomes]
rs2776798	0.95[ASN][1000 genomes]
rs2788077	0.95[ASN][1000 genomes]
rs4714044	0.95[ASN][1000 genomes]
rs4714045	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527191	chr6:37173793-37180523	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37167200-37179200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:37169400-37174200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr6:37169400-37174200	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr6:37169600-37176200	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:37170000-37178000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:37170800-37178000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:37171000-37175400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:37171000-37175600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:37171000-37177400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:37171200-37175200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:37171600-37175400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:37172000-37179000	Enhancers	Fetal Thymus	thymus
13	chr6:37172400-37177800	Weak transcription	Fetal Heart	heart
14	chr6:37172400-37177800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:37173000-37174200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr6:37173000-37175600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:37173000-37178400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:37173000-37179000	Enhancers	Primary T cells fromperipheralblood	blood
19	chr6:37173200-37174600	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr6:37173200-37175000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr6:37173200-37175600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:37173200-37176400	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr6:37173400-37175800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:37173600-37174800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr6:37173600-37175600	Weak transcription	Hela-S3	cervix
26	chr6:37173600-37178000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr6:37173600-37178000	Weak transcription	Fetal Intestine Small	intestine
28	chr6:37173600-37178200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr6:37173600-37178200	Weak transcription	A549	lung
30	chr6:37173800-37174600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr6:37173800-37175400	Weak transcription	Primary T cells from cord blood	blood
32	chr6:37173800-37175400	Weak transcription	HepG2	liver
33	chr6:37173800-37175600	Weak transcription	GM12878-XiMat	blood
34	chr6:37173800-37175800	Enhancers	K562	blood
35	chr6:37173800-37176400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:37173800-37178800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr6:37174000-37174400	Enhancers	Monocytes-CD14+_RO01746	blood
38	chr6:37174000-37175000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr6:37174000-37175200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr6:37174000-37175600	Enhancers	Dnd41	blood

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