Variant report

Variant	rs1627606
Chromosome Location	chr3:112823509-112823510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11924319	1.00[CHB][hapmap]
rs16860551	1.00[CHB][hapmap]
rs2613968	1.00[CHB][hapmap]
rs2700231	1.00[CHB][hapmap]
rs6802665	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv877344	chr3:112789865-112854339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112784800-112824000	Weak transcription	Primary B cells from cord blood	blood
2	chr3:112808800-112832400	Weak transcription	Primary T cells from cord blood	blood
3	chr3:112817600-112824000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:112819400-112830400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:112821200-112825800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr3:112821600-112823600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr3:112821600-112825800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:112821800-112824600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:112821800-112825200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr3:112821800-112825600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:112822000-112823800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr3:112822000-112824600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:112822000-112826400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:112822200-112823600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:112822200-112825800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr3:112822200-112826200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:112822200-112829400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr3:112822400-112825000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:112822400-112825800	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr3:112823000-112825600	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr3:112823000-112825800	Enhancers	Fetal Stomach	stomach
22	chr3:112823200-112823800	Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr3:112823200-112824000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr3:112823200-112824400	Enhancers	Fetal Muscle Leg	muscle
25	chr3:112823200-112824400	Weak transcription	A549	lung
26	chr3:112823200-112825000	Enhancers	Ovary	ovary
27	chr3:112823200-112826600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr3:112823400-112823600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
29	chr3:112823400-112824000	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr3:112823400-112824200	Enhancers	Brain Germinal Matrix	brain
31	chr3:112823400-112824400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
32	chr3:112823400-112824400	Weak transcription	HepG2	liver
33	chr3:112823400-112827600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr3:112823400-112827600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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