Variant report

Variant	rs1627627
Chromosome Location	chr15:52741624-52741625
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11070891	1.00[MEX][hapmap]
rs1669869	1.00[AMR][1000 genomes]
rs1724587	1.00[AMR][1000 genomes]
rs2444020	1.00[AMR][1000 genomes]
rs2950055	1.00[AMR][1000 genomes]
rs4776029	1.00[MEX][hapmap]
rs4776032	1.00[MEX][hapmap]
rs4776033	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1054899	chr15:52662365-52803756	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv1832020	chr15:52702400-52901914	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52730400-52744600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr15:52730600-52741800	Weak transcription	Gastric	stomach
3	chr15:52730800-52741800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr15:52732600-52750600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:52734400-52743800	Weak transcription	Brain Angular Gyrus	brain
6	chr15:52734600-52753200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:52734800-52743800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr15:52734800-52747400	Weak transcription	HSMM	muscle
9	chr15:52737200-52742000	Enhancers	Adipose Nuclei	Adipose
10	chr15:52738000-52743800	Weak transcription	Brain Anterior Caudate	brain
11	chr15:52738800-52741800	Weak transcription	Psoas Muscle	Psoas
12	chr15:52738800-52744600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr15:52739000-52741800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:52739000-52751800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:52739000-52753600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:52739600-52742200	Enhancers	Right Atrium	heart
17	chr15:52740200-52742200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr15:52740200-52742400	Enhancers	Left Ventricle	heart
19	chr15:52740400-52741800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr15:52740400-52742000	Weak transcription	Spleen	Spleen
21	chr15:52740400-52756200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr15:52740600-52744200	Weak transcription	Brain Hippocampus Middle	brain
23	chr15:52740600-52753200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr15:52740800-52742400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:52741000-52742000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr15:52741000-52743400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr15:52741200-52743800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr15:52741400-52743000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr15:52741600-52741800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr15:52741600-52741800	Enhancers	Brain Cingulate Gyrus	brain
31	chr15:52741600-52741800	Enhancers	Ovary	ovary
32	chr15:52741600-52742000	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr15:52741600-52742000	Enhancers	HUVEC	blood vessel
34	chr15:52741600-52742200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr15:52741600-52742200	Enhancers	Pancreas	Pancrea
36	chr15:52741600-52742200	Enhancers	Right Ventricle	heart
37	chr15:52741600-52742200	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr15:52741600-52742400	Enhancers	Skeletal Muscle Male	skeletal muscle

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