Variant report

Variant	rs1629569
Chromosome Location	chr7:87616394-87616395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:87616263..87618499-chr7:87632755..87634787,2	K562	blood:
2	chr7:87554924..87556875-chr7:87615962..87617797,2	MCF-7	breast:

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10235694	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10241669	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10266440	0.94[EUR][1000 genomes]
rs10279744	0.89[EUR][1000 genomes]
rs10279940	0.94[EUR][1000 genomes]
rs10282572	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs10952906	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11770982	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11972409	1.00[CEU][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12669586	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12704375	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12704380	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12704381	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1613737	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1623535	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1631368	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1637487	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1637488	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1637489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1637492	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs1637494	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs1637495	0.87[EUR][1000 genomes]
rs1637496	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1637497	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1637498	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1637499	1.00[CEU][hapmap];0.84[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1637500	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs1637502	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1637503	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1637504	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1637505	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1637506	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1637508	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1688886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1688887	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1688888	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1688890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1688891	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1688893	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1688894	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1688895	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1688896	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1688897	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1688898	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1688899	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1688901	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1688902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17150161	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2021741	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2022160	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2022163	1.00[CEU][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2022164	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2022555	0.95[CEU][hapmap]
rs2023533	1.00[CEU][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2024018	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2024019	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2079422	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2079423	0.94[EUR][1000 genomes]
rs2097917	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2108087	1.00[CEU][hapmap]
rs2158766	1.00[CEU][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2282948	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2282949	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2299190	0.85[CEU][hapmap];0.81[AMR][1000 genomes]
rs2373486	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2373487	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28432284	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28794871	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4728718	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56160917	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56897831	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59135798	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60069756	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6465124	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6465126	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6465127	0.89[EUR][1000 genomes]
rs7786538	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7802934	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7803521	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7809391	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7809550	0.81[ASN][1000 genomes]
rs9641021	0.95[CEU][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1023352	chr7:87418818-88192925	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv539005	chr7:87418818-88192925	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv525073	chr7:87535096-87812968	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87594400-87618000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:87605000-87631400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:87607000-87622200	Weak transcription	GM12878-XiMat	blood
4	chr7:87609400-87620800	Weak transcription	Dnd41	blood

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