Variant report

Variant	rs163060
Chromosome Location	chr18:24474009-24474010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs163058	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761995	chr18:24214286-24502570	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv833600	chr18:24473894-24681019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24473800-24474200	Active TSS	Skeletal Muscle Female	skeletal muscle
2	chr18:24473800-24474600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr18:24473800-24474800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr18:24473800-24475400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr18:24473800-24475600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr18:24473800-24475600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr18:24473800-24476000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr18:24474000-24474400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr18:24474000-24474800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr18:24474000-24475600	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links