Variant report

Variant	rs1631357
Chromosome Location	chr1:76573090-76573091
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs167050	1.00[CHD][hapmap]
rs188333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs289690	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs289698	1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs289699	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs289701	1.00[CHD][hapmap]
rs291066	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2992503	1.00[CHD][hapmap]
rs3011995	1.00[CHD][hapmap]
rs447383	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[YRI][hapmap];0.92[ASN][1000 genomes]
rs502421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551954	0.92[ASN][1000 genomes]
rs613909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61558985	0.92[ASN][1000 genomes]
rs622212	1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs643289	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs817822	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs915403	1.00[CHD][hapmap]
rs915404	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv871862	chr1:76525783-76598209	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76548400-76576200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:76557400-76605800	Weak transcription	Fetal Intestine Small	intestine
3	chr1:76557600-76588800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:76560200-76573400	Weak transcription	Brain Angular Gyrus	brain
5	chr1:76569400-76573200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr1:76569400-76575400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr1:76570000-76573600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:76570200-76573800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:76570800-76574200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:76571000-76573800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:76571200-76575000	Weak transcription	Left Ventricle	heart
12	chr1:76571200-76575200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr1:76571200-76575400	Weak transcription	Fetal Lung	lung
14	chr1:76571800-76574200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr1:76571800-76575000	Weak transcription	Primary B cells from peripheral blood	blood
16	chr1:76572000-76574000	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr1:76572000-76574200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr1:76572200-76573200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:76572200-76575000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr1:76572200-76575200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:76572200-76577000	Enhancers	Brain Substantia Nigra	brain
22	chr1:76572800-76574000	Weak transcription	Brain Anterior Caudate	brain
23	chr1:76572800-76575000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr1:76572800-76575600	Weak transcription	Primary B cells from cord blood	blood
25	chr1:76573000-76573400	Weak transcription	Fetal Kidney	kidney
26	chr1:76573000-76573600	Weak transcription	Brain Hippocampus Middle	brain
27	chr1:76573000-76575000	Weak transcription	Brain Cingulate Gyrus	brain

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