Variant report

Variant	rs1632907
Chromosome Location	chr6:29894794-29894795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr6:29894374-29895300	HepG2	liver:	n/a	n/a
2	POLR2A	chr6:29893889-29895314	IMR90	lung:	n/a	n/a
3	CEBPD	chr6:29894697-29894854	HepG2	liver:	n/a	n/a
4	SMARCC1	chr6:29893706-29894824	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr6:29893773-29895220	GM18526	blood:	n/a	n/a
6	POLR2A	chr6:29894298-29895472	HepG2	liver:	n/a	n/a
7	SMARCB1	chr6:29893601-29895282	Hela-S3	cervix:	n/a	n/a
8	POU2F2	chr6:29894666-29894889	GM12878	blood:	n/a	n/a
9	RELA	chr6:29893804-29895242	GM15510	blood:	n/a	n/a
10	STAT1	chr6:29894718-29895168	GM12878	blood:	n/a	chr6:29894862-29894873
11	MAZ	chr6:29894653-29894920	GM12878	blood:	n/a	n/a
12	MAX	chr6:29894794-29895374	MCF-7	breast:	n/a	n/a
13	POLR2A	chr6:29894605-29895401	MCF-7	breast:	n/a	n/a
14	SIN3AK20	chr6:29894397-29894881	PANC-1	pancreas:	n/a	n/a
15	SIN3A	chr6:29894636-29894840	GM12878	blood:	n/a	n/a
16	POLR2A	chr6:29893820-29895396	GM19193	blood:	n/a	n/a
17	HEY1	chr6:29894664-29894879	HepG2	liver:	n/a	n/a
18	ZKSCAN1	chr6:29894794-29894829	Hela-S3	cervix:	n/a	n/a
19	IRF4	chr6:29894573-29894898	GM12878	blood:	n/a	n/a
20	POLR2A	chr6:29892647-29895342	Hela-S3	cervix:	n/a	n/a
21	SMC3	chr6:29894557-29895179	Hela-S3	cervix:	n/a	n/a
22	MAX	chr6:29894241-29895414	HepG2	liver:	n/a	n/a
23	POLR2A	chr6:29894642-29894867	GM12891	blood:	n/a	n/a
24	PML	chr6:29894366-29895075	GM12878	blood:	n/a	n/a
25	MAZ	chr6:29893899-29895216	Hela-S3	cervix:	n/a	n/a
26	CHD2	chr6:29894456-29895234	Hela-S3	cervix:	n/a	chr6:29894850-29894857
27	POLR2A	chr6:29894276-29894876	GM12891	blood:	n/a	n/a
28	POLR2A	chr6:29894127-29895244	HepG2	liver:	n/a	n/a
29	POLR2A	chr6:29894294-29894903	Hela-S3	cervix:	n/a	n/a
30	BCLAF1	chr6:29894302-29894828	GM12878	blood:	n/a	chr6:29894808-29894821
31	FOXM1	chr6:29894583-29895018	GM12878	blood:	n/a	n/a
32	RELA	chr6:29893895-29895539	GM10847	blood:	n/a	n/a
33	POLR2A	chr6:29894475-29894859	GM12878	blood:	n/a	n/a
34	CHD2	chr6:29894475-29895136	GM12878	blood:	n/a	chr6:29894850-29894857
35	POLR2A	chr6:29894113-29895265	HUVEC	blood vessel:	n/a	n/a
36	YY1	chr6:29893997-29895276	GM12892	blood:	n/a	n/a
37	POLR2A	chr6:29894165-29895343	Raji	blood:	n/a	n/a
38	POLR2A	chr6:29894450-29894854	HepG2	liver:	n/a	n/a
39	HCFC1	chr6:29893728-29895147	Hela-S3	cervix:	n/a	n/a
40	RUNX3	chr6:29894354-29894956	GM12878	blood:	n/a	n/a
41	POLR2A	chr6:29894403-29895125	GM12878	blood:	n/a	n/a
42	POLR2A	chr6:29894358-29894888	Hela-S3	cervix:	n/a	n/a
43	RELA	chr6:29893880-29895244	GM12892	blood:	n/a	n/a
44	POLR2A	chr6:29894435-29895409	PBDE	blood:	n/a	n/a
45	SIN3AK20	chr6:29894410-29894884	HepG2	liver:	n/a	n/a
46	POLR2A	chr6:29894494-29895262	U87	brain:	n/a	n/a
47	POLR2A	chr6:29893872-29895154	GM12878	blood:	n/a	n/a
48	HEY1	chr6:29894524-29895341	HepG2	liver:	n/a	n/a
49	IRF1	chr6:29894668-29895010	K562	blood:	n/a	chr6:29894863-29894873 chr6:29894861-29894875 chr6:29894861-29894881 chr6:29894857-29894874 chr6:29894862-29894875 chr6:29894859-29894876 chr6:29894862-29894876 chr6:29894862-29894875 chr6:29894862-29894873 chr6:29894859-29894873 chr6:29894862-29894875 chr6:29894863-29894877
50	ZBTB7A	chr6:29894667-29894859	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29894320..29896517-chr6:29908932..29910659,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HLA-A-3	chr6:29894106-29896105	NONHSAT108565
2	lnc-RNF39-11	chr6:29893701-29894992	NR_001317

Variant related genes	Relation type
HCG4B	TF binding region
ENSG00000206503	Chromatin interaction

Extended variants
information (count: 556 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1054176	0.85[EUR][1000 genomes]
rs1610618	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1610619	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1610751	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1610754	0.81[AMR][1000 genomes]
rs1610755	0.82[AMR][1000 genomes]
rs1610756	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1610757	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1611302	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1611304	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1611401	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1611407	0.90[EUR][1000 genomes]
rs1611408	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1611413	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1611430	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1611442	0.81[AMR][1000 genomes]
rs1611443	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1611444	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1611447	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1611452	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1611456	0.82[AMR][1000 genomes]
rs1611457	0.82[AMR][1000 genomes]
rs1611458	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1611461	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1611462	0.81[AMR][1000 genomes]
rs1611474	0.84[AMR][1000 genomes]
rs1611481	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1611484	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1611504	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1625356	0.80[AMR][1000 genomes]
rs1627904	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1632893	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1632894	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1632896	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1632901	0.82[EUR][1000 genomes]
rs1632911	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1632912	0.82[AMR][1000 genomes]
rs1632913	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1632922	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1632923	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1655932	0.81[EUR][1000 genomes]
rs1655936	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1655944	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1655949	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2508042	0.81[AMR][1000 genomes]
rs2517740	0.81[EUR][1000 genomes]
rs2517741	0.81[EUR][1000 genomes]
rs2517752	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2517789	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2517805	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2524004	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2524023	0.81[AMR][1000 genomes]
rs2524024	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2524027	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2524029	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2524031	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2734923	0.81[AMR][1000 genomes]
rs2734924	0.82[AMR][1000 genomes]
rs2734928	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2734930	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3094167	0.87[EUR][1000 genomes]
rs3094181	0.81[EUR][1000 genomes]
rs3094645	0.82[EUR][1000 genomes]
rs3094646	0.82[EUR][1000 genomes]
rs3115595	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs3115603	0.87[EUR][1000 genomes]
rs3115604	0.87[EUR][1000 genomes]
rs3115612	0.81[EUR][1000 genomes]
rs3132696	0.84[EUR][1000 genomes]
rs420306	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9259265	0.87[EUR][1000 genomes]
rs9259585	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9259588	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9259640	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9259641	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9259645	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9259842	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9259870	0.82[EUR][1000 genomes]
rs9259871	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9259925	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:476 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20940	chr6:29653954-29923410	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv427749	chr6:29659525-29975144	Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	esv3441842	chr6:29715749-29942950	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	esv3332677	chr6:29733187-29961463	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	esv3475027	chr6:29733297-29922699	Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	esv3475028	chr6:29733297-29922699	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	esv3430372	chr6:29759523-29974277	Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
8	esv3426050	chr6:29761594-29918407	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	esv3431350	chr6:29765473-29922767	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
10	esv3451016	chr6:29774115-29929436	Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
11	esv17468	chr6:29782014-29923275	Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
12	esv3411103	chr6:29783090-29930409	Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
13	esv2758040	chr6:29792434-29975144	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
14	esv2759412	chr6:29792434-29975144	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
15	esv3391180	chr6:29798321-29977430	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
16	esv1828587	chr6:29809138-29904721	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
17	esv1849827	chr6:29812776-29918720	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
18	esv1851637	chr6:29813719-29912800	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
19	nsv820564	chr6:29814830-29923275	Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
20	nsv823469	chr6:29814830-29923275	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
21	nsv601232	chr6:29814977-29895250	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
22	nsv601233	chr6:29814977-29896659	Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
23	esv1845786	chr6:29817123-29955129	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
24	esv1810372	chr6:29817323-29913915	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
25	esv1822590	chr6:29817323-29913915	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
26	esv1848127	chr6:29817323-29966451	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
27	esv3346286	chr6:29818834-29908132	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
28	esv1819995	chr6:29824229-29904721	Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
29	esv1810879	chr6:29824229-29917771	Transcr. at gene 5' and 3' Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
30	esv1848221	chr6:29824229-29918837	Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
31	nsv508398	chr6:29825777-30003403	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
32	esv3369212	chr6:29827361-29960177	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
33	nsv432859	chr6:29828972-29898897	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
34	esv1794708	chr6:29829340-29912800	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
35	esv1831742	chr6:29829340-29912800	Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
36	esv1803223	chr6:29829390-29913627	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
37	esv1812939	chr6:29830358-29913929	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
38	esv1824193	chr6:29831309-29925490	Strong transcription Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
39	esv32544	chr6:29831716-29944103	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
40	esv1811402	chr6:29832066-29915156	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
41	esv1813799	chr6:29832266-29913929	Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
42	esv1824141	chr6:29832266-29924807	Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
43	esv1846778	chr6:29832911-29913627	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
44	esv1848196	chr6:29833812-29913000	Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
45	esv2757159	chr6:29834472-29965501	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
46	esv3376588	chr6:29834667-29964324	Genic enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
47	esv2756061	chr6:29836463-29915993	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
48	esv2752113	chr6:29836463-29916253	Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
49	esv2753490	chr6:29836463-29916253	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
50	esv2763941	chr6:29836636-29921127	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1632907	HCG4P6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29893200-29895200	Active TSS	Duodenum Smooth Muscle	Duodenum
2	chr6:29893200-29895400	Active TSS	Esophagus	oesophagus
3	chr6:29893400-29895000	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr6:29893400-29895000	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr6:29893400-29895400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:29893400-29895400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:29893400-29895400	Active TSS	Liver	Liver
8	chr6:29893600-29895000	Active TSS	Colon Smooth Muscle	Colon
9	chr6:29893600-29895400	Flanking Active TSS	HMEC	breast
10	chr6:29893800-29894800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
11	chr6:29893800-29894800	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr6:29893800-29894800	Flanking Active TSS	HUVEC	blood vessel
13	chr6:29893800-29895000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:29893800-29895000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:29893800-29895000	Active TSS	Duodenum Mucosa	Duodenum
16	chr6:29893800-29895000	Active TSS	Fetal Thymus	thymus
17	chr6:29893800-29895000	Active TSS	Gastric	stomach
18	chr6:29893800-29895200	Active TSS	Aorta	Aorta
19	chr6:29893800-29895200	Active TSS	Brain Anterior Caudate	brain
20	chr6:29893800-29895200	Active TSS	Brain Inferior Temporal Lobe	brain
21	chr6:29893800-29895200	Active TSS	Fetal Kidney	kidney
22	chr6:29893800-29895200	Active TSS	Lung	lung
23	chr6:29893800-29895200	Active TSS	Ovary	ovary
24	chr6:29893800-29895200	Active TSS	Psoas Muscle	Psoas
25	chr6:29893800-29895200	Active TSS	Right Atrium	heart
26	chr6:29893800-29895200	Active TSS	Sigmoid Colon	Sigmoid Colon
27	chr6:29893800-29895200	Active TSS	Thymus	Thymus
28	chr6:29893800-29895200	Active TSS	HSMM	muscle
29	chr6:29893800-29895400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
30	chr6:29893800-29895400	Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr6:29893800-29895400	Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr6:29893800-29895400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:29893800-29895400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:29893800-29895400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
35	chr6:29893800-29895400	Active TSS	HSMMtube	muscle
36	chr6:29893800-29895600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr6:29893800-29895600	Active TSS	Brain Angular Gyrus	brain
38	chr6:29893800-29895600	Active TSS	Brain Hippocampus Middle	brain
39	chr6:29893800-29895600	Active TSS	Brain Substantia Nigra	brain
40	chr6:29893800-29895600	Enhancers	Fetal Stomach	stomach
41	chr6:29893800-29895600	Flanking Active TSS	Stomach Smooth Muscle	stomach
42	chr6:29893800-29895600	Active TSS	Osteobl	bone
43	chr6:29894000-29894800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:29894000-29894800	Active TSS	iPS-18 Cell Line	embryonic stem cell
45	chr6:29894000-29894800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:29894000-29894800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:29894000-29894800	Active TSS	Colonic Mucosa	Colon
48	chr6:29894000-29894800	Bivalent/Poised TSS	Fetal Brain Female	brain
49	chr6:29894000-29894800	Active TSS	Placenta Amnion	Placenta Amnion
50	chr6:29894000-29895000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin

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