Variant report

Variant	rs1633066
Chromosome Location	chr6:29724367-29724368
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29721433..29724421-chr6:29794290..29797232,2	MCF-7	breast:
2	chr6:29719715..29721313-chr6:29723567..29725279,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272236	Chromatin interaction
ENSG00000204632	Chromatin interaction
ENSG00000229142	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1476572	0.80[ASN][1000 genomes]
rs1476573	0.81[ASN][1000 genomes]
rs1610584	0.81[ASN][1000 genomes]
rs1610585	0.82[ASN][1000 genomes]
rs1610586	0.81[ASN][1000 genomes]
rs1610587	0.81[ASN][1000 genomes]
rs1610590	0.81[ASN][1000 genomes]
rs1610592	0.81[ASN][1000 genomes]
rs1610593	0.81[ASN][1000 genomes]
rs1610594	0.81[ASN][1000 genomes]
rs1610595	0.81[ASN][1000 genomes]
rs1610745	0.81[ASN][1000 genomes]
rs1611356	0.81[ASN][1000 genomes]
rs1611357	0.81[ASN][1000 genomes]
rs1611358	0.80[ASN][1000 genomes]
rs1611359	0.80[ASN][1000 genomes]
rs1611360	0.80[ASN][1000 genomes]
rs1611361	0.80[ASN][1000 genomes]
rs1611362	0.80[ASN][1000 genomes]
rs1611363	0.81[ASN][1000 genomes]
rs1611365	0.81[ASN][1000 genomes]
rs1611366	0.81[ASN][1000 genomes]
rs1611368	0.82[ASN][1000 genomes]
rs1611369	0.81[ASN][1000 genomes]
rs1611370	0.81[ASN][1000 genomes]
rs1611372	0.81[ASN][1000 genomes]
rs1611375	0.81[ASN][1000 genomes]
rs1611376	0.81[ASN][1000 genomes]
rs1611377	0.81[ASN][1000 genomes]
rs1611378	0.81[ASN][1000 genomes]
rs1611379	0.81[ASN][1000 genomes]
rs1627465	0.82[ASN][1000 genomes]
rs1736913	0.92[ASN][1000 genomes]
rs1736919	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1736930	0.81[ASN][1000 genomes]
rs1737069	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2072894	0.87[ASN][1000 genomes]
rs2076174	0.87[ASN][1000 genomes]
rs2743941	0.81[EUR][1000 genomes]
rs3116788	0.80[ASN][1000 genomes]
rs3116789	0.81[ASN][1000 genomes]
rs3116790	0.81[ASN][1000 genomes]
rs3116794	0.80[ASN][1000 genomes]
rs3116796	0.80[ASN][1000 genomes]
rs3116797	0.80[ASN][1000 genomes]
rs3131863	0.81[ASN][1000 genomes]
rs3823318	0.89[ASN][1000 genomes]
rs6901686	0.87[ASN][1000 genomes]
rs7741597	0.80[ASN][1000 genomes]
rs7751815	0.82[ASN][1000 genomes]
rs7755571	0.80[ASN][1000 genomes]
rs7773358	0.80[ASN][1000 genomes]
rs9258205	0.82[ASN][1000 genomes]
rs9258207	0.82[ASN][1000 genomes]
rs9258211	0.82[ASN][1000 genomes]
rs9258212	0.82[ASN][1000 genomes]
rs9258214	0.82[ASN][1000 genomes]
rs9258215	0.82[ASN][1000 genomes]
rs9258216	0.82[ASN][1000 genomes]
rs9258218	0.82[ASN][1000 genomes]
rs9258223	0.82[ASN][1000 genomes]
rs9258224	0.87[ASN][1000 genomes]
rs9258225	0.87[ASN][1000 genomes]
rs9258226	0.82[ASN][1000 genomes]
rs9258227	0.82[ASN][1000 genomes]
rs9258230	0.87[ASN][1000 genomes]
rs9258236	0.87[ASN][1000 genomes]
rs9258241	0.84[ASN][1000 genomes]
rs9258242	0.87[ASN][1000 genomes]
rs9258244	0.89[ASN][1000 genomes]
rs9258258	0.89[ASN][1000 genomes]
rs9258259	0.89[ASN][1000 genomes]
rs9258260	0.89[ASN][1000 genomes]
rs9258262	0.89[ASN][1000 genomes]
rs9258265	0.89[ASN][1000 genomes]
rs9258272	0.87[ASN][1000 genomes]
rs9258274	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20940	chr6:29653954-29923410	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv428475	chr6:29659525-29763392	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv428139	chr6:29659525-29892317	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv427749	chr6:29659525-29975144	Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv508397	chr6:29663132-29761448	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	esv1821077	chr6:29670915-29726207	Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	esv1794141	chr6:29670915-29765814	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
8	nsv10809	chr6:29692573-29794119	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv883532	chr6:29703262-29814963	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
10	esv3441842	chr6:29715749-29942950	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29721000-29725200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:29721400-29724600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:29721600-29724600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:29721600-29725400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:29721600-29729400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:29721800-29724600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:29721800-29725400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:29721800-29725400	Weak transcription	Hela-S3	cervix
9	chr6:29721800-29725400	Weak transcription	HMEC	breast
10	chr6:29723000-29728600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr6:29723200-29728600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:29723200-29728600	Enhancers	H9 Cell Line	embryonic stem cell
13	chr6:29723200-29728600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:29723600-29725200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:29723600-29725400	Weak transcription	K562	blood
16	chr6:29723600-29726800	Weak transcription	Spleen	Spleen
17	chr6:29723600-29728000	Weak transcription	Primary B cells from peripheral blood	blood
18	chr6:29723800-29725200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:29723800-29725400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr6:29723800-29725400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr6:29724200-29724800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
22	chr6:29724200-29726800	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr6:29724200-29728000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr6:29724200-29728400	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr6:29724200-29728600	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr6:29724200-29728600	Enhancers	HUES64 Cell Line	embryonic stem cell

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