Variant report

Variant	rs1636444
Chromosome Location	chr7:101332332-101332333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:101331169..101333172-chr7:101342500..101345849,4	MCF-7	breast:
2	chr7:101330663..101332938-chr7:101456021..101458863,3	K562	blood:
3	chr7:101331022..101333643-chr7:101341514..101343495,2	MCF-7	breast:
4	chr7:101332096..101334015-chr7:101646286..101648242,2	MCF-7	breast:
5	chr7:101329586..101337237-chr7:101456658..101461622,22	MCF-7	breast:
6	chr7:101331319..101332632-chr7:101457135..101458012,7	MCF-7	breast:
7	chr7:101330774..101332855-chr7:101456777..101459235,3	K562	blood:
8	chr7:101330630..101332814-chr7:101878417..101880968,2	K562	blood:
9	chr7:101330039..101336974-chr7:101455968..101461022,11	MCF-7	breast:
10	chr7:101331101..101332335-chr7:101879641..101880410,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11769066	0.86[YRI][hapmap]
rs1541425	1.00[ASN][1000 genomes]
rs2410856	1.00[ASN][1000 genomes]
rs28850410	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4729746	1.00[ASN][1000 genomes]
rs62466311	0.85[AFR][1000 genomes]
rs6465823	1.00[ASN][1000 genomes]
rs6968978	1.00[ASN][1000 genomes]
rs7786466	1.00[ASN][1000 genomes]
rs7794024	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1018544	chr7:101225639-101424889	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv539045	chr7:101225639-101424889	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv482758	chr7:101231458-101395219	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv831079	chr7:101273495-101466776	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	esv3355104	chr7:101328432-101332730	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101330600-101333000	Enhancers	Spleen	Spleen
2	chr7:101331400-101332400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr7:101331400-101332400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr7:101331400-101332400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:101331400-101332400	Bivalent Enhancer	Adipose Nuclei	Adipose
6	chr7:101331400-101332400	Flanking Active TSS	Hela-S3	cervix
7	chr7:101331400-101332600	Enhancers	Placenta	Placenta
8	chr7:101331400-101332600	Enhancers	HUVEC	blood vessel
9	chr7:101331400-101334000	Enhancers	Fetal Intestine Small	intestine
10	chr7:101331600-101332400	Enhancers	NHDF-Ad	bronchial
11	chr7:101331600-101332600	Enhancers	Liver	Liver
12	chr7:101331600-101332600	Enhancers	Placenta Amnion	Placenta Amnion
13	chr7:101331800-101332400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:101331800-101332400	Enhancers	GM12878-XiMat	blood
15	chr7:101332000-101332400	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr7:101332000-101332400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:101332000-101332400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr7:101332000-101332400	Flanking Active TSS	A549	lung
19	chr7:101332000-101332600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr7:101332000-101332600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
21	chr7:101332000-101332600	Flanking Bivalent TSS/Enh	HepG2	liver
22	chr7:101332000-101332800	Enhancers	Fetal Muscle Leg	muscle
23	chr7:101332000-101333200	Weak transcription	Fetal Heart	heart
24	chr7:101332000-101333800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
25	chr7:101332000-101334000	Enhancers	Duodenum Mucosa	Duodenum
26	chr7:101332000-101334000	Enhancers	Fetal Intestine Large	intestine
27	chr7:101332000-101376800	Weak transcription	Right Atrium	heart
28	chr7:101332200-101332400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:101332200-101332400	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr7:101332200-101332400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr7:101332200-101332400	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr7:101332200-101332400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr7:101332200-101332400	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr7:101332200-101332400	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr7:101332200-101332600	Enhancers	Dnd41	blood
36	chr7:101332200-101332800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
37	chr7:101332200-101332800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr7:101332200-101332800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr7:101332200-101333400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr7:101332200-101333600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr7:101332200-101333600	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr7:101332200-101333600	Weak transcription	Right Ventricle	heart
43	chr7:101332200-101335000	Weak transcription	Primary hematopoietic stem cells	blood
44	chr7:101332200-101335200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr7:101332200-101335200	Weak transcription	Primary B cells from peripheral blood	blood
46	chr7:101332200-101335200	Weak transcription	Pancreas	Pancrea
47	chr7:101332200-101335200	Weak transcription	Thymus	Thymus
48	chr7:101332200-101335400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr7:101332200-101335400	Weak transcription	Fetal Thymus	thymus

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