Variant report

Variant	rs1638677
Chromosome Location	chr3:47330194-47330195
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:47327849..47330607-chr3:47409211..47411755,2	MCF-7	breast:
2	chr3:47328553..47330784-chr3:47354135..47356276,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs295443	0.84[AFR][1000 genomes]
rs295444	0.81[AFR][1000 genomes]
rs295445	0.81[AFR][1000 genomes]
rs6778673	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876756	chr3:47002931-47586514	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1007714	chr3:47084387-47331570	Transcr. at gene 5' and 3' Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1014457	chr3:47222292-47335175	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv536560	chr3:47222292-47335175	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47325400-47361000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:47325600-47330400	Weak transcription	Colonic Mucosa	Colon
3	chr3:47325600-47331200	Weak transcription	Aorta	Aorta
4	chr3:47325600-47332000	Weak transcription	Esophagus	oesophagus
5	chr3:47325600-47334200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:47325600-47334400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:47325600-47334400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:47325600-47337800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:47325600-47338000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr3:47325600-47344600	Weak transcription	Ovary	ovary
11	chr3:47325600-47367600	Weak transcription	A549	lung
12	chr3:47325800-47331400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:47325800-47331600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:47325800-47332400	Weak transcription	Right Ventricle	heart
15	chr3:47325800-47332400	Weak transcription	NH-A	brain
16	chr3:47325800-47337600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr3:47325800-47338000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr3:47325800-47338200	Weak transcription	HUVEC	blood vessel
19	chr3:47325800-47343800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr3:47325800-47352000	Weak transcription	Fetal Kidney	kidney
21	chr3:47326200-47336400	Weak transcription	Lung	lung
22	chr3:47326200-47340800	Weak transcription	Fetal Intestine Large	intestine
23	chr3:47326200-47344600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr3:47326200-47356200	Weak transcription	Fetal Heart	heart
25	chr3:47326200-47356600	Weak transcription	NHDF-Ad	bronchial
26	chr3:47326200-47359600	Weak transcription	Fetal Lung	lung
27	chr3:47326200-47362200	Weak transcription	Gastric	stomach
28	chr3:47326200-47363200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr3:47326400-47338200	Weak transcription	Stomach Mucosa	stomach
30	chr3:47326400-47364400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr3:47326600-47330400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr3:47326600-47334200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr3:47326600-47341200	Weak transcription	Placenta	Placenta
34	chr3:47326600-47351600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr3:47326800-47333600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr3:47326800-47356600	Weak transcription	Small Intestine	intestine
37	chr3:47327000-47330200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr3:47327000-47330200	Weak transcription	Hela-S3	cervix
39	chr3:47327000-47332400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr3:47327000-47344400	Weak transcription	Brain Angular Gyrus	brain
41	chr3:47327200-47336600	Strong transcription	Primary T cells from cord blood	blood
42	chr3:47327400-47330200	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr3:47327400-47330600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr3:47327400-47330800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr3:47327400-47330800	Strong transcription	Fetal Stomach	stomach
46	chr3:47327600-47333200	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr3:47327600-47333600	Strong transcription	Stomach Smooth Muscle	stomach
48	chr3:47327600-47334400	Strong transcription	Fetal Muscle Leg	muscle
49	chr3:47327600-47348400	Weak transcription	Fetal Brain Male	brain
50	chr3:47327800-47330400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links