Variant report

Variant	rs1639469
Chromosome Location	chr7:146146570-146146571
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:146143168..146145467-chr7:146146129..146147911,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1358075	0.91[YRI][hapmap]
rs1358077	1.00[EUR][1000 genomes]
rs1405170	1.00[EUR][1000 genomes]
rs1405171	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs1526155	0.81[YRI][hapmap]
rs1526160	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs1631820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1639436	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs1639439	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs1639441	0.81[YRI][hapmap]
rs1639442	1.00[EUR][1000 genomes]
rs1639457	0.85[YRI][hapmap]
rs1639459	0.84[YRI][hapmap]
rs1639462	0.91[YRI][hapmap]
rs1639497	1.00[EUR][1000 genomes]
rs1639498	1.00[EUR][1000 genomes]
rs1639499	1.00[EUR][1000 genomes]
rs1639500	1.00[EUR][1000 genomes]
rs1639502	1.00[EUR][1000 genomes]
rs1639503	1.00[EUR][1000 genomes]
rs1639508	0.81[YRI][hapmap]
rs1718072	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1718085	1.00[EUR][1000 genomes]
rs1718094	1.00[EUR][1000 genomes]
rs1718095	1.00[EUR][1000 genomes]
rs1718098	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs1724499	1.00[EUR][1000 genomes]
rs1724501	1.00[EUR][1000 genomes]
rs1724502	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs1724503	1.00[EUR][1000 genomes]
rs1724504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724505	0.81[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724514	0.86[YRI][hapmap];1.00[EUR][1000 genomes]
rs1724518	1.00[EUR][1000 genomes]
rs1724519	1.00[EUR][1000 genomes]
rs1724520	1.00[EUR][1000 genomes]
rs1724521	1.00[EUR][1000 genomes]
rs1724522	1.00[EUR][1000 genomes]
rs1724523	1.00[EUR][1000 genomes]
rs1724524	1.00[EUR][1000 genomes]
rs2693421	0.81[YRI][hapmap]
rs6947836	1.00[EUR][1000 genomes]
rs6969042	1.00[EUR][1000 genomes]
rs7804084	1.00[EUR][1000 genomes]
rs802193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs802197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs802199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs802201	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs802202	1.00[EUR][1000 genomes]
rs802204	1.00[EUR][1000 genomes]
rs940958	1.00[EUR][1000 genomes]
rs940959	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs940960	1.00[EUR][1000 genomes]
rs940961	1.00[EUR][1000 genomes]
rs940962	1.00[EUR][1000 genomes]
rs940963	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv889387	chr7:145903862-146239545	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv917027	chr7:146069317-146194011	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1024679	chr7:146091479-146248268	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1017138	chr7:146102286-146318562	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv889390	chr7:146111034-146239545	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv5994	chr7:146131977-146151284	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1028798	chr7:146138480-146318562	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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