Variant report

Variant	rs164429
Chromosome Location	chr5:51985986-51985987
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11738457	0.83[AMR][1000 genomes]
rs17265188	0.87[AMR][1000 genomes]
rs6450075	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754787	chr5:51688543-52193243	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv462187	chr5:51758804-52333420	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv598163	chr5:51758804-52333420	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv471013	chr5:51779197-52339114	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:51971800-51987400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:51978800-51986000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:51978800-51986800	Weak transcription	NHLF	lung
4	chr5:51979000-51986200	Weak transcription	HSMMtube	muscle
5	chr5:51979200-51986200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:51980600-51986800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr5:51984800-51986200	Weak transcription	NHDF-Ad	bronchial
8	chr5:51985400-51989200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:51985600-51986000	Enhancers	Pancreas	Pancrea
10	chr5:51985600-51986400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:51985600-51988000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:51985600-51988400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr5:51985600-51988400	Enhancers	Hela-S3	cervix
14	chr5:51985600-51990600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:51985600-51993000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr5:51985800-51986200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr5:51985800-51986200	Enhancers	Lung	lung
18	chr5:51985800-51986200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr5:51985800-51986400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr5:51985800-51986400	Enhancers	Ovary	ovary
21	chr5:51985800-51986800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr5:51985800-51989000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr5:51985800-51989600	Enhancers	Fetal Lung	lung

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