Variant report
| Variant | rs1644962 |
|---|---|
| Chromosome Location | chr5:40723074-40723075 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:40692400-40741200 | Weak transcription | Primary T killer memory cells from peripheral blood | blood |
| 2 | chr5:40692800-40733800 | Weak transcription | Skeletal Muscle Male | skeletal muscle |
| 3 | chr5:40692800-40735000 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 4 | chr5:40693600-40727400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 5 | chr5:40695200-40727000 | Weak transcription | HSMM | muscle |
| 6 | chr5:40705600-40727000 | Weak transcription | Primary T helper cells PMA-I stimulated | -- |
| 7 | chr5:40709600-40745000 | Weak transcription | Primary T helper memory cells from peripheral blood 1 | blood |
| 8 | chr5:40712800-40741200 | Weak transcription | Primary T helper memory cells from peripheral blood 2 | blood |
| 9 | chr5:40713200-40740600 | Weak transcription | Right Ventricle | heart |
| 10 | chr5:40713600-40734800 | Weak transcription | Hela-S3 | cervix |
| 11 | chr5:40714400-40727400 | Weak transcription | Brain Anterior Caudate | brain |
| 12 | chr5:40714600-40739400 | Weak transcription | GM12878-XiMat | blood |
| 13 | chr5:40715400-40733600 | Weak transcription | Fetal Heart | heart |
| 14 | chr5:40715400-40739400 | Weak transcription | Placenta Amnion | Placenta Amnion |
| 15 | chr5:40715600-40734800 | Weak transcription | NHEK | skin |
| 16 | chr5:40716400-40733200 | Weak transcription | HUVEC | blood vessel |
| 17 | chr5:40716400-40733600 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 18 | chr5:40716400-40733800 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
| 19 | chr5:40716800-40724000 | Weak transcription | Primary T cells effector/memory enriched fromperipheralblood | blood |
| 20 | chr5:40717000-40727400 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
| 21 | chr5:40717600-40733600 | Weak transcription | Brain Inferior Temporal Lobe | brain |
| 22 | chr5:40717800-40724000 | Weak transcription | A549 | lung |
| 23 | chr5:40717800-40727400 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
| 24 | chr5:40717800-40733600 | Weak transcription | Brain Substantia Nigra | brain |
| 25 | chr5:40717800-40733600 | Weak transcription | NHDF-Ad | bronchial |
| 26 | chr5:40717800-40734400 | Weak transcription | NH-A | brain |
| 27 | chr5:40718000-40724000 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 28 | chr5:40718000-40727000 | Weak transcription | Osteobl | bone |
| 29 | chr5:40718000-40727400 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 30 | chr5:40720000-40727400 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 31 | chr5:40720000-40733600 | Weak transcription | Fetal Kidney | kidney |
| 32 | chr5:40720400-40723600 | Weak transcription | K562 | blood |
| 33 | chr5:40720800-40724600 | Strong transcription | Primary neutrophils fromperipheralblood | blood |
| 34 | chr5:40720800-40724600 | ZNF genes & repeats | Dnd41 | blood |
| 35 | chr5:40720800-40724800 | ZNF genes & repeats | Fetal Intestine Large | intestine |
| 36 | chr5:40720800-40724800 | ZNF genes & repeats | Fetal Intestine Small | intestine |
| 37 | chr5:40721200-40727600 | Weak transcription | HepG2 | liver |
| 38 | chr5:40721200-40733800 | Weak transcription | Psoas Muscle | Psoas |
| 39 | chr5:40721200-40739600 | Weak transcription | Primary T helper naive cells from peripheral blood | blood |
| 40 | chr5:40721400-40723800 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
| 41 | chr5:40721400-40727400 | Weak transcription | Duodenum Mucosa | Duodenum |
| 42 | chr5:40721400-40727400 | Weak transcription | HSMMtube | muscle |
| 43 | chr5:40721400-40735000 | Weak transcription | Small Intestine | intestine |
| 44 | chr5:40721400-40739600 | Weak transcription | Placenta | Placenta |
| 45 | chr5:40721400-40741400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 46 | chr5:40721600-40723800 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
| 47 | chr5:40721600-40724200 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 48 | chr5:40721600-40727400 | Weak transcription | Primary B cells from peripheral blood | blood |
| 49 | chr5:40721600-40727400 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
| 50 | chr5:40721600-40727600 | Weak transcription | Primary T helper 17 cells PMA-I stimulated | -- |
