Variant report

Variant	rs164850
Chromosome Location	chr5:106901053-106901054
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:106899655..106901454-chr5:106901668..106904062,2	MCF-7	breast:
2	chr5:106895105..106896726-chr5:106898607..106901485,2	MCF-7	breast:
3	chr5:106900235..106903223-chr5:106906365..106909142,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1471041	0.90[ASN][1000 genomes]
rs149155	0.90[ASN][1000 genomes]
rs163614	0.90[ASN][1000 genomes]
rs163889	0.90[ASN][1000 genomes]
rs163890	0.90[ASN][1000 genomes]
rs164697	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164851	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164971	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs352612	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs352613	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs395904	0.81[ASN][1000 genomes]
rs60575744	0.90[ASN][1000 genomes]
rs849520	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106887200-106906800	Weak transcription	Right Ventricle	heart
2	chr5:106889400-106903000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:106892000-106901800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:106893200-106901800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr5:106893400-106901600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:106893800-106906000	Weak transcription	NHDF-Ad	bronchial
7	chr5:106894000-106902000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:106895000-106901600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:106895000-106901600	Weak transcription	HMEC	breast
10	chr5:106895000-106901800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:106895000-106906800	Weak transcription	Lung	lung
12	chr5:106899200-106903600	Enhancers	Fetal Stomach	stomach
13	chr5:106899400-106901800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr5:106899400-106902200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:106899400-106904400	Enhancers	Fetal Lung	lung
16	chr5:106899400-106907000	Enhancers	Fetal Heart	heart
17	chr5:106899400-106915600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr5:106899600-106901600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr5:106899600-106901600	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr5:106899600-106901600	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr5:106899600-106904000	Enhancers	A549	lung
22	chr5:106899600-106904800	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr5:106899600-106905000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr5:106899600-106905000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr5:106899600-106905200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr5:106899800-106901800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:106900000-106901600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr5:106900000-106901600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr5:106900000-106902600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr5:106900000-106906000	Weak transcription	Fetal Brain Male	brain
31	chr5:106900200-106903000	Enhancers	Fetal Kidney	kidney
32	chr5:106900200-106906800	Weak transcription	Aorta	Aorta
33	chr5:106900400-106901400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr5:106900600-106901200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr5:106900600-106902000	Enhancers	Dnd41	blood
36	chr5:106900800-106901400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr5:106900800-106901400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr5:106900800-106901600	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr5:106900800-106901600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr5:106900800-106901800	Weak transcription	NHLF	lung
41	chr5:106900800-106902400	Enhancers	Pancreatic Islets	Pancreatic Islet
42	chr5:106900800-106906000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr5:106900800-106906200	Weak transcription	Small Intestine	intestine
44	chr5:106900800-106906800	Weak transcription	HSMM	muscle
45	chr5:106901000-106901200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr5:106901000-106901400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr5:106901000-106902000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr5:106901000-106902000	Enhancers	Muscle Satellite Cultured Cells	--
49	chr5:106901000-106902000	Enhancers	Osteobl	bone
50	chr5:106901000-106902200	Weak transcription	Rectal Smooth Muscle	rectum

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