Variant report

Variant	rs1650694
Chromosome Location	chr5:79952426-79952427
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr5:79952417-79952574	MCF-7	breast:	n/a	n/a
2	CTCF	chr5:79952290-79952612	MCF-7	breast:	n/a	n/a
3	ZNF143	chr5:79952301-79952665	GM12878	blood:	n/a	n/a
4	CTCF	chr5:79952400-79952550	AG10803	skin:	n/a	n/a
5	ZNF384	chr5:79952416-79952525	K562	blood:	n/a	n/a
6	CTCF	chr5:79952400-79952550	Hela-S3	cervix:	n/a	n/a
7	CTCF	chr5:79952400-79952550	AG04450	lung:	n/a	n/a
8	CTCF	chr5:79952360-79952510	HCT-116	colon:	n/a	n/a
9	CTCF	chr5:79952300-79952590	HFF-Myc	foreskin:	n/a	n/a
10	CTCF	chr5:79952340-79952490	HBMEC	blood vessel:	n/a	n/a
11	CTCF	chr5:79952400-79952550	HBMEC	blood vessel:	n/a	n/a
12	RAD21	chr5:79952258-79952632	HepG2	liver:	n/a	chr5:79952404-79952423 chr5:79952409-79952419 chr5:79952409-79952421
13	CTCF	chr5:79952360-79952510	GM12870	blood:	n/a	n/a
14	CTCF	chr5:79952420-79952570	RPTEC	kidney:	n/a	n/a
15	CTCF	chr5:79952400-79952550	SK-N-SH_RA	brain:	n/a	n/a
16	RAD21	chr5:79952286-79952629	H1-hESC	embryonic stem cell:	n/a	chr5:79952404-79952423 chr5:79952409-79952419 chr5:79952409-79952421
17	CTCF	chr5:79952420-79952570	GM12865	blood:	n/a	n/a
18	CTCF	chr5:79952380-79952530	GM12870	blood:	n/a	n/a
19	RCOR1	chr5:79952395-79952595	K562	blood:	n/a	n/a
20	CTCF	chr5:79952400-79952550	MCF-7	breast:	n/a	n/a
21	CTCF	chr5:79952420-79952570	HRE	kidney:	n/a	n/a
22	CTCF	chr5:79952379-79952606	GM12878	blood:	n/a	n/a
23	RAD21	chr5:79952325-79952631	SK-N-SH_RA	brain:	n/a	chr5:79952404-79952423 chr5:79952409-79952419 chr5:79952409-79952421
24	CTCF	chr5:79952380-79952530	GM12864	blood:	n/a	n/a
25	TBL1XR1	chr5:79952297-79952442	K562	blood:	n/a	n/a
26	CTCF	chr5:79952420-79952570	GM12878	blood:	n/a	n/a
27	CTCF	chr5:79952380-79952530	WERI-Rb-1	eye:	n/a	n/a
28	CTCF	chr5:79952400-79952550	BE2_C	brain:	n/a	n/a
29	RAD21	chr5:79952351-79952538	GM12878	blood:	n/a	chr5:79952404-79952423 chr5:79952409-79952419 chr5:79952409-79952421
30	CTCF	chr5:79952395-79952577	K562	blood:	n/a	n/a
31	CTCF	chr5:79952420-79952570	Caco-2	colon:	n/a	n/a
32	RAD21	chr5:79952291-79952635	HepG2	liver:	n/a	chr5:79952404-79952423 chr5:79952409-79952419 chr5:79952409-79952421
33	CTCF	chr5:79952380-79952530	GM12871	blood:	n/a	n/a
34	CTCF	chr5:79952400-79952550	GM12878	blood:	n/a	n/a
35	ZNF143	chr5:79952405-79952576	K562	blood:	n/a	n/a
36	CTCF	chr5:79952403-79952587	HepG2	liver:	n/a	n/a
37	CTCF	chr5:79952360-79952510	HRPEpiC	eye:	n/a	n/a
38	CTCF	chr5:79952420-79952570	HMF	breast:	n/a	n/a
39	CTCF	chr5:79952380-79952530	Caco-2	colon:	n/a	n/a
40	CTCF	chr5:79952420-79952570	GM12868	blood:	n/a	n/a
41	CTCF	chr5:79952420-79952570	HCPEpiC	choroid plexus:	n/a	n/a
42	CTCF	chr5:79952380-79952530	Hela-S3	cervix:	n/a	n/a
43	CTCF	chr5:79952400-79952550	GM12875	blood:	n/a	n/a
44	CTCF	chr5:79952303-79952672	GM12878	blood:	n/a	n/a
45	CTCF	chr5:79952420-79952570	AG04449	skin:	n/a	n/a
46	CTCF	chr5:79952390-79952560	H1-hESC	embryonic stem cell:	n/a	n/a
47	SMC3	chr5:79952393-79952599	HepG2	liver:	n/a	n/a
48	CTCF	chr5:79952340-79952490	GM12874	blood:	n/a	n/a
49	CTCF	chr5:79952320-79952470	RPTEC	kidney:	n/a	n/a
50	CTCF	chr5:79952420-79952570	AoAF	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr5:79930876..79933489-chr5:79951399..79953527,2	K562	blood:
2	chr5:79781713..79786255-chr5:79948613..79954295,12	MCF-7	breast:
3	chr5:79949138..79951235-chr5:79952143..79954933,3	K562	blood:
4	chr5:79702114..79706204-chr5:79947823..79953616,8	MCF-7	breast:
5	chr5:79949138..79951235-chr5:79952143..79954241,3	K562	blood:
6	chr5:79773551..79776073-chr5:79951057..79953387,2	K562	blood:

Variant related genes	Relation type
DHFR	TF binding region
ENSG00000249042	Chromatin interaction
ENSG00000228716	Chromatin interaction
ENSG00000152380	Chromatin interaction
ENSG00000039319	Chromatin interaction
ENSG00000113318	Chromatin interaction

Extended variants
information (count: 173 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:172)

rs_ID	r²[population]
rs10168	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11950480	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11952744	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13161245	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1382539	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1382540	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1382541	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1382542	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1382543	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1478834	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1478835	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1623489	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1628627	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1631572	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1643634	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1643635	0.80[AMR][1000 genomes]
rs1643636	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1643637	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1643638	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1643639	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1643641	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1643644	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1643645	0.85[AMR][1000 genomes]
rs1643646	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1643647	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1643648	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1643649	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1643650	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1643651	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1643652	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1643653	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1643655	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1643657	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1643658	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1643659	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1643660	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1643661	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1643662	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1643664	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1650650	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650651	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1650652	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650653	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650654	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650655	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650656	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1650657	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650658	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650659	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650661	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650662	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650663	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650664	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650665	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650666	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650667	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650668	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650670	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650671	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650674	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650675	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650676	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650677	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650678	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650679	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650680	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650681	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650682	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650683	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1650685	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1650688	0.82[AMR][1000 genomes]
rs1650692	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1650693	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1650695	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1650696	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1650707	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1650709	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1650710	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1650711	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1650712	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1650713	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1650715	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1650718	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1677623	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1677625	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1677626	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1677628	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1677629	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1677633	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1677634	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1677635	0.96[ASN][1000 genomes]
rs1677636	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1677638	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1677639	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1677640	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1677641	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1677642	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1677643	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1677644	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1677645	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1677647	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1677648	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1677649	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1677650	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1677666	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1677667	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1677670	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1677676	0.89[ASN][1000 genomes]
rs1677680	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1677682	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1677683	0.86[ASN][1000 genomes]
rs1677684	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1677685	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1677686	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1677687	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1677688	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1677689	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1677690	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1677691	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1677692	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1677693	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1677694	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1677695	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1677696	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1677698	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1677700	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1677701	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1677702	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1677703	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1677704	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1677706	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1677708	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1824837	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1824838	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1824839	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2250063	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2405880	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2560423	0.89[AMR][1000 genomes]
rs2560424	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2618372	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs26282	0.89[ASN][1000 genomes]
rs28027	0.89[ASN][1000 genomes]
rs2897262	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56147256	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56357417	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57771284	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs58063248	0.86[AMR][1000 genomes]
rs58490646	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59117994	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs60244599	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6151613	0.86[ASN][1000 genomes]
rs6151614	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6151619	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6151620	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6151632	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6151633	0.86[ASN][1000 genomes]
rs67837398	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs71578847	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73765839	0.80[AMR][1000 genomes]
rs7387	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs836818	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs836821	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs836822	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs836823	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs844370	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs861373	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs863215	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs864133	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs865645	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs865646	0.86[ASN][1000 genomes]
rs865647	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs966762	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs1650694	ANKRD34B	cis	Whole Blood	GTEx
rs1650694	DHFR	cis	Heart Left Ventricle	GTEx
rs1650694	DHFR///LOC643509	Cis_1M	lymphoblastoid	RTeQTL
rs1650694	MSH3	cis	Whole Blood	GTEx
rs1650694	MSH3	cis	Thyroid	GTEx
rs1650694	DHFR	cis	Muscle Skeletal	GTEx
rs1650694	DHFR	cis	Adipose Subcutaneous	GTEx
rs1650694	DHFR	cis	Whole Blood	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79951000-79952600	Flanking Active TSS	Osteobl	bone
2	chr5:79951200-79954800	Weak transcription	Ovary	ovary
3	chr5:79951200-79963200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:79951400-79956000	Weak transcription	Aorta	Aorta
5	chr5:79951400-79963200	Weak transcription	Right Ventricle	heart
6	chr5:79951600-79952600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr5:79951600-79952600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr5:79951600-79952600	Enhancers	HUVEC	blood vessel
9	chr5:79951600-79952600	Enhancers	NH-A	brain
10	chr5:79951600-79953000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr5:79951600-79953000	Weak transcription	Fetal Stomach	stomach
12	chr5:79951600-79953000	Weak transcription	Psoas Muscle	Psoas
13	chr5:79951600-79953200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr5:79951600-79953200	Weak transcription	Left Ventricle	heart
15	chr5:79951600-79953600	Weak transcription	Lung	lung
16	chr5:79951600-79953600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr5:79951600-79953800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr5:79951600-79954200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr5:79951600-79954200	Weak transcription	Colonic Mucosa	Colon
20	chr5:79951600-79954400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr5:79951600-79954400	Weak transcription	Gastric	stomach
22	chr5:79951600-79955000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr5:79951600-79955000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr5:79951600-79955200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr5:79951600-79959000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:79951600-79962600	Weak transcription	Esophagus	oesophagus
27	chr5:79951600-79963200	Weak transcription	Pancreas	Pancrea
28	chr5:79951600-79963400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr5:79951600-79963400	Weak transcription	Brain Germinal Matrix	brain
30	chr5:79951600-79963600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr5:79951600-79969200	Weak transcription	Stomach Mucosa	stomach
32	chr5:79951600-79972200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr5:79951600-80015600	Weak transcription	Small Intestine	intestine
34	chr5:79951800-79952600	Genic enhancers	HUES64 Cell Line	embryonic stem cell
35	chr5:79951800-79952600	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr5:79951800-79952600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr5:79951800-79952600	Enhancers	Hela-S3	cervix
38	chr5:79951800-79952800	Enhancers	HepG2	liver
39	chr5:79951800-79953200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr5:79951800-79953200	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr5:79951800-79953200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr5:79951800-79953200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr5:79951800-79953200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr5:79951800-79953400	Weak transcription	Primary B cells from cord blood	blood
45	chr5:79951800-79953600	Weak transcription	Brain Anterior Caudate	brain
46	chr5:79951800-79953600	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr5:79951800-79954000	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr5:79951800-79954200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr5:79951800-79954400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr5:79951800-79954400	Weak transcription	Placenta Amnion	Placenta Amnion

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